dkist-processing-ops 1.6.12__tar.gz → 1.6.14__tar.gz

{dkist_processing_ops-1.6.12 → dkist_processing_ops-1.6.14}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dkist-processing-ops
-Version: 1.6.12
+Version: 1.6.14
 Summary: Automated Processing smoke test and operations workflows
 Author-email: NSO / AURA <dkistdc@nso.edu>
 License: BSD 3-Clause

{dkist_processing_ops-1.6.12 → dkist_processing_ops-1.6.14}/dkist_processing_ops/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '1.6.12'
-__version_tuple__ = version_tuple = (1, 6, 12)
+__version__ = version = '1.6.14'
+__version_tuple__ = version_tuple = (1, 6, 14)

dkist_processing_ops-1.6.14/dkist_processing_ops/tasks/read_memory_leak.py

@@ -0,0 +1,74 @@
+import gc
+from abc import ABC
+from pathlib import Path
+
+import numpy as np
+from astropy.io import fits
+from dkist_processing_common.codecs.fits import fits_hdu_decoder
+from dkist_processing_common.codecs.path import path_decoder
+from dkist_processing_common.models.tags import Tag
+from dkist_processing_common.tasks import WorkflowTaskBase
+
+
+def generated_hdu_decoder(path: Path) -> fits.PrimaryHDU | fits.CompImageHDU:
+    data = np.random.rand(4096, 4096)
+    hdu = fits.CompImageHDU(data)
+    return hdu
+
+
+def fits_garbage_collect_hdu_decoder(path: Path) -> fits.PrimaryHDU | fits.CompImageHDU:
+    hdul = fits.open(path)
+    hdu = fits.CompImageHDU(header=hdul[1].header, data=hdul[1].data)
+    hdul.close()
+    del hdul
+    gc.collect()
+    return hdu
+
+
+class FitsDataRead(WorkflowTaskBase, ABC):
+    @property
+    def run_type(self):
+        return self.metadata_store_recipe_run_configuration().get("run_type", "file_read")
+
+    def run(self) -> None:
+        if self.run_type == "garbage_collect_read":
+            hdus = self.read(
+                tags=[Tag.input(), Tag.frame()], decoder=fits_garbage_collect_hdu_decoder
+            )
+            for hdu in hdus:
+                h = hdu.header
+                d = hdu.data
+
+        if self.run_type == "garbage_collect_task":
+            filepaths = self.read(tags=[Tag.input(), Tag.frame()], decoder=path_decoder)
+            for filepath in filepaths:
+                hdu = fits_garbage_collect_hdu_decoder(filepath)
+                h = hdu.header
+                d = hdu.data
+
+        if self.run_type == "file_read":
+            hdus = self.read(tags=[Tag.input(), Tag.frame()], decoder=fits_hdu_decoder)
+            for hdu in hdus:
+                h = hdu.header
+                d = hdu.data
+        #
+        # if self.run_type == "generated_read":
+        #     hdus = self.read(tags=[Tag.input(), Tag.frame()], decoder=generated_hdu_decoder)
+        #     for hdu in hdus:
+        #         h = hdu.header
+        #         d = hdu.data
+        #
+        # if self.run_type == "file_task":
+        #     filepaths = self.read(tags=[Tag.input(), Tag.frame()], decoder=path_decoder)
+        #     for filepath in filepaths:
+        #         hdu = fits.open(filepath)[1]
+        #         h = hdu.header
+        #         d = hdu.data
+        #
+        # if self.run_type == "generated_task":
+        #     filepaths = self.read(tags=[Tag.input(), Tag.frame()], decoder=path_decoder)
+        #     for filepath in filepaths:
+        #         data = np.random.rand(4096, 4096)
+        #         hdu = fits.CompImageHDU(data)
+        #         h = hdu.header
+        #         d = hdu.data

{dkist_processing_ops-1.6.12 → dkist_processing_ops-1.6.14}/dkist_processing_ops.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dkist-processing-ops
-Version: 1.6.12
+Version: 1.6.14
 Summary: Automated Processing smoke test and operations workflows
 Author-email: NSO / AURA <dkistdc@nso.edu>
 License: BSD 3-Clause

dkist_processing_ops-1.6.12/dkist_processing_ops/tasks/read_memory_leak.py

@@ -1,79 +0,0 @@
-import logging
-import os
-import sys
-from abc import ABC
-from pathlib import Path
-from typing import Any
-from typing import Generator
-
-import numpy as np
-from astropy.io import fits
-from dkist_processing_common.codecs.path import path_decoder
-from dkist_processing_common.models.tags import Tag
-from dkist_processing_common.tasks import tag_type_hint
-from dkist_processing_common.tasks import WorkflowTaskBase
-
-
-def yield_from_read(
-    self, tags: tag_type_hint, decoder: callable = path_decoder, **decoder_kwargs
-) -> Generator[Any, None, None]:
-    yield from (decoder(p, **decoder_kwargs) for p in self.scratch.find_all(tags=tags))
-
-
-def binary_decoder(path: Path) -> bytes:
-    """Generates a random blob of binary data."""
-    data = os.urandom(67109008)  # This is the size of the VBI data arrays, in bytes
-    logging.info(f"Size of data: {sys.getsizeof(data)}")
-    logging.info(f"Bytes of data: {len(data)}")
-    return data
-
-
-def fits_smart_hdu_decoder(path: Path) -> fits.PrimaryHDU | fits.CompImageHDU:
-    """Read a Path with `fits` to produce an `HDUList`."""
-    hdu_list = fits.open(path, lazy_load_hdus=False)
-    return hdu_list[1]
-
-
-class FitsDataRead(WorkflowTaskBase, ABC):
-    @property
-    def data_type(self) -> str:
-        """Recipe run configuration indicating how fFITS data should be read."""
-        return self.metadata_store_recipe_run_configuration().get("data_type", "fits")
-
-    @property
-    def read_method(self):
-        return self.metadata_store_recipe_run_configuration().get("read_method", "return")
-
-    @property
-    def manipulate_data(self):
-        return self.metadata_store_recipe_run_configuration().get("manipulate_data", True)
-
-    def run(self) -> None:
-        if self.data_type == "fits":
-            if self.read_method == "return":
-                hdus = self.read(tags=[Tag.input(), Tag.frame()], decoder=fits_smart_hdu_decoder)
-                for hdu in hdus:
-                    h = hdu.header
-                    d = hdu.data
-                    if self.manipulate_data:
-                        total = np.sum(d)
-            if self.read_method == "yield":
-                hdus = yield_from_read(
-                    self, tags=[Tag.input(), Tag.frame()], decoder=fits_smart_hdu_decoder
-                )
-                for hdu in hdus:
-                    h = hdu.header
-                    d = hdu.data
-                    if self.manipulate_data:
-                        total = np.sum(d)
-        if self.data_type == "binary":
-            if self.read_method == "return":
-                hdus = self.read(tags=[Tag.input(), Tag.frame()], decoder=binary_decoder)
-                for hdu in hdus:
-                    data = hdu
-            if self.read_method == "yield":
-                hdus = yield_from_read(
-                    self, tags=[Tag.input(), Tag.frame()], decoder=binary_decoder
-                )
-                for hdu in hdus:
-                    data = hdu