dkist-processing-cryonirsp 2.1.2rc1__tar.gz → 3.0.0rc2__tar.gz

{dkist_processing_cryonirsp-2.1.2rc1 → dkist_processing_cryonirsp-3.0.0rc2}/CHANGELOG.rst

@@ -1,3 +1,21 @@
+v2.1.2 (2026-09-24)
+===================
+
+Misc
+----
+
+- Use the "level0_spec214" file schema keyword argument in test Datasets.
+  With this keyword, subsequent translation of the resulting headers to
+  Spec 214 is not necessary.  Simplify test functions that generate headers
+  using this change. (`#302 <https://bitbucket.org/dkistdc/dkist-processing-cryonirsp/pull-requests/302>`__)
+- Use dkist-fits-specifications v4.29.0, which includes the Trend FITS specification.
+  Use dkist-header-validator v6.0.0, a significant refactor that allows multi-HDU objects to be validated.
+  Use dkist-processing-common v14.5.0, which accommodates the changes to the header validator. (`#302 <https://bitbucket.org/dkistdc/dkist-processing-cryonirsp/pull-requests/302>`__)
+- Validators no longer have validate-and-translate methods.
+  Where still necessary, replace validate-and-translate calls with a call to
+  validate and then a call to translate. (`#302 <https://bitbucket.org/dkistdc/dkist-processing-cryonirsp/pull-requests/302>`__)
+
+
 v2.1.1 (2026-08-28)
 ===================
 

{dkist_processing_cryonirsp-2.1.2rc1 → dkist_processing_cryonirsp-3.0.0rc2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: dkist-processing-cryonirsp
-Version: 2.1.2rc1
+Version: 3.0.0rc2
 Summary: Science processing code for the Cryo-NIRSP instrument on DKIST
 Author-email: NSO / AURA <dkistdc@nso.edu>
 License: BSD-3-Clause
@@ -15,14 +15,13 @@ Requires-Python: >=3.13
 Description-Content-Type: text/x-rst
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+Requires-Dist: dkist-processing-common==14.5.1rc1
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dkist_processing_cryonirsp-3.0.0rc2/changelog/306.doc.rst

@@ -0,0 +1 @@
+Update online documentation "Dataset Extras" page to include information about the beam boundaries extra.

dkist_processing_cryonirsp-3.0.0rc2/changelog/306.feature.2.rst

@@ -0,0 +1 @@
+Save the full set of beam boundaries used to extract illuminated regions from the raw data as a dataset extra (called "BEAM_BOUNDARIES").

dkist_processing_cryonirsp-3.0.0rc2/changelog/306.feature.rst

@@ -0,0 +1,2 @@
+Replace `BeamBoundariesCalibration` task with `SpatialBeamBoundaries`, which only computes the boundaries of the illuminated region along the spatial axis.
+The spectral axis (or second spatial axis, for CI) boundaries are hard-coded as a pipeline parameter.

dkist_processing_cryonirsp-3.0.0rc2/changelog/306.misc.rst

@@ -0,0 +1 @@
+Replace "x" and "y" language with "axis_0" and "axis_1", respectively, in the `BeamBoundaries` model.

dkist_processing_cryonirsp-3.0.0rc2/changelog/306.science.rst

@@ -0,0 +1,2 @@
+The task that computes the boundaries of the useful, illuminated regions of the INPUT data has been simplified and made more robust to data with very high
+dynamic range. This improvement will most affect data taken at 1430nm, but will slightly change the final array shape for all data.

{dkist_processing_cryonirsp-2.1.2rc1 → dkist_processing_cryonirsp-3.0.0rc2}/dkist_processing_cryonirsp/codecs/fits.py

@@ -6,13 +6,13 @@ import numpy as np
 from dkist_processing_common.codecs.fits import fits_access_decoder as common_fits_access_decoder
 from dkist_processing_common.models.fits_access import FitsAccessBase
 
-from dkist_processing_cryonirsp.models.beam_boundaries import BeamBoundary
+from dkist_processing_cryonirsp.models.beam_boundaries import BeamBoundaries
 
 
 def cryo_fits_access_decoder(
     path: Path,
     fits_access_class: FitsAccessBase = FitsAccessBase,
-    beam_boundary: BeamBoundary | None = None,
+    beam_boundary: BeamBoundaries | None = None,
     **fits_access_kwargs,
 ) -> FitsAccessBase:
     """
@@ -33,7 +33,7 @@ def cryo_fits_access_decoder(
 def cryo_fits_array_decoder(
     path: Path,
     fits_access_class: FitsAccessBase = FitsAccessBase,
-    beam_boundary: BeamBoundary | None = None,
+    beam_boundary: BeamBoundaries | None = None,
     auto_squeeze: bool = True,
     **fits_access_kwargs,
 ) -> np.array:

{dkist_processing_cryonirsp-2.1.2rc1 → dkist_processing_cryonirsp-3.0.0rc2}/dkist_processing_cryonirsp/models/beam_boundaries.py

@@ -6,33 +6,33 @@ import numpy as np
 
 
 @dataclass
-class BeamBoundary:
+class BeamBoundaries:
     """Simple dataclass to hold boundary information for the illuminated portion of the beam array."""
 
-    y_min: int
-    y_max: int
-    x_min: int
-    x_max: int
+    axis_0_min: int
+    axis_0_max: int
+    axis_1_min: int
+    axis_1_max: int
 
     @property
-    def y_slice(self):
-        """Return a slice object representing the illumination along the y-axis (numpy 0 axis)."""
-        return slice(self.y_min, self.y_max)
+    def axis_0_slice(self):
+        """Return a slice object representing the illumination along the 0th axis."""
+        return slice(self.axis_0_min, self.axis_0_max)
 
     @property
-    def x_slice(self):
-        """Return a slice object representing the illumination along the x-axis (numpy 1 axis)."""
-        return slice(self.x_min, self.x_max)
+    def axis_1_slice(self):
+        """Return a slice object representing the illumination along the 1st axis."""
+        return slice(self.axis_1_min, self.axis_1_max)
 
     @property
     def slices(self):
         """Return a tuple of slices in numpy order representing the illuminated portion of the beam array."""
-        return self.y_slice, self.x_slice
+        return self.axis_0_slice, self.axis_1_slice
 
     @property
     def beam_boundaries(self):
         """Return a tuple containing the beam boundaries."""
-        return self.y_min, self.y_max, self.x_min, self.x_max
+        return self.axis_0_min, self.axis_0_max, self.axis_1_min, self.axis_1_max
 
     @property
     def beam_boundaries_array(self):

{dkist_processing_cryonirsp-2.1.2rc1 → dkist_processing_cryonirsp-3.0.0rc2}/dkist_processing_cryonirsp/models/parameters.py

@@ -110,27 +110,39 @@ class CryonirspParameters(ParameterBase, ParameterWavelengthMixin, ParameterArmI
         return self._find_most_recent_past_value("cryonirsp_polcal_pac_fit_mode")
 
     @property
-    def beam_boundaries_smoothing_disk_size(self) -> int:
-        """Return the size of the smoothing disk (in pixels) to be used in the beam boundaries computation."""
-        return self._find_most_recent_past_value("cryonirsp_beam_boundaries_smoothing_disk_size")
-
-    @property
-    def beam_boundaries_upsample_factor(self) -> int:
-        """Return the upsample factor to be used in the beam boundaries cross correlation computation."""
-        return self._find_most_recent_past_value("cryonirsp_beam_boundaries_upsample_factor")
-
-    @property
-    def beam_boundaries_sp_beam_transition_region_size_fraction(self) -> float:
+    def beam_boundaries_spectral_beam_slices(self) -> list[slice]:
         """
-        Fraction of full spectral size to use as the size of the transition region between the two SP beams.
+        Return a list of `slice` objects that extract beams in the spectral dimension.
 
-        A region with size = (this parameter * full spectral size) and centered at the center of the spectral dimension
-        will be ignored when extracting the beams.
+        For CI the "spectral" dimension is just the same axis of the chip that is spectral in SP data.
         """
+        raw_boundaries = self._find_parameter_for_arm(
+            "cryonirsp_beam_boundaries_spectral_beam_slices"
+        )
+        return [slice(b[0], b[1]) for b in raw_boundaries]
+
+    @property
+    def beam_boundaries_normalization_percentile(self) -> float:
+        """Return the percentile (0, 100) used when collapsing the wavelength dimension into a single spatial profile."""
         return self._find_most_recent_past_value(
-            "cryonirsp_beam_boundaries_sp_beam_transition_region_size_fraction"
+            "cryonirsp_beam_boundaries_normalization_percentile"
         )
 
+    @property
+    def beam_boundaries_edge_profile_window_px(self) -> int:
+        """Return the size of the moving window used to compute an edge profile."""
+        return self._find_most_recent_past_value("cryonirsp_beam_boundaries_edge_profile_window_px")
+
+    @property
+    def beam_boundaries_edge_threshold_sigma(self) -> float:
+        """Return the threshold for determining if an illumination edge is strong enough to consider, in units of edge profile sigma."""
+        return self._find_most_recent_past_value("cryonirsp_beam_boundaries_edge_threshold_sigma")
+
+    @property
+    def beam_boundaries_detector_margin_px(self) -> int:
+        """Return the distance away from a detector edge to hard-code boundaries that otherwise would run up to the edge."""
+        return self._find_most_recent_past_value("cryonirsp_beam_boundaries_detector_margin_px")
+
     @property
     def bad_pixel_map_median_filter_size(self) -> list[int, int]:
         """Return the smoothing disk size to be used in the bad pixel map computation."""