dkist-processing-cryonirsp 1.7.7rc1__tar.gz → 1.8.0__tar.gz

{dkist_processing_cryonirsp-1.7.7rc1 → dkist_processing_cryonirsp-1.8.0}/CHANGELOG.rst

@@ -1,3 +1,21 @@
+v1.8.0 (2025-06-16)
+===================
+
+Bugfixes
+--------
+
+- Update the beam alignment code to handle edge effects in determining the shift required to align beams one and two. The final spectra passed to the cross correlation method are now cropped by removing the outside 10% of pixels on each edge. (`#195 <https://bitbucket.org/dkistdc/dkist-processing-cryonirsp/pull-requests/195>`__)
+
+
+v1.7.7 (2025-06-02)
+===================
+
+Misc
+----
+
+- Remove use of input dataset mixin imported from dkist-processing-common. (`#190 <https://bitbucket.org/dkistdc/dkist-processing-cryonirsp/pull-requests/190>`__)
+
+
 v1.7.6 (2025-05-30)
 ===================
 

{dkist_processing_cryonirsp-1.7.7rc1 → dkist_processing_cryonirsp-1.8.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: dkist-processing-cryonirsp
-Version: 1.7.7rc1
+Version: 1.8.0
 Summary: Science processing code for the Cryo-NIRSP instrument on DKIST
 Author-email: NSO / AURA <dkistdc@nso.edu>
 License: BSD-3-Clause
@@ -17,7 +17,7 @@ Requires-Dist: Pillow==10.4.0
 Requires-Dist: astropy==7.0.2
 Requires-Dist: dkist-fits-specifications==4.17.0
 Requires-Dist: dkist-header-validator==5.2.1
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 Requires-Dist: dkist-processing-math==2.2.0
 Requires-Dist: dkist-processing-pac==3.1.1
 Requires-Dist: dkist-spectral-lines==3.0.0
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 Requires-Dist: dkist-header-validator==5.2.1; extra == "frozen"
-Requires-Dist: dkist-processing-common==10.8.4rc1; extra == "frozen"
+Requires-Dist: dkist-processing-common==10.9.0; extra == "frozen"
 Requires-Dist: dkist-processing-core==5.1.1; extra == "frozen"
-Requires-Dist: dkist-processing-cryonirsp==1.7.7rc1; extra == "frozen"
+Requires-Dist: dkist-processing-cryonirsp==1.8.0; extra == "frozen"
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 Requires-Dist: dkist-processing-pac==3.1.1; extra == "frozen"
 Requires-Dist: dkist-service-configuration==2.2; extra == "frozen"
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 Requires-Dist: h11==0.16.0; extra == "frozen"
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 Requires-Dist: imageio-ffmpeg==0.6.0; extra == "frozen"
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 Requires-Dist: itsdangerous==2.2.0; extra == "frozen"
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 Requires-Dist: llvmlite==0.44.0; extra == "frozen"
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@@ -209,17 +208,17 @@ Requires-Dist: networkx==3.5; extra == "frozen"
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+Requires-Dist: opentelemetry-exporter-otlp==1.34.1; extra == "frozen"
+Requires-Dist: opentelemetry-exporter-otlp-proto-common==1.34.1; extra == "frozen"
+Requires-Dist: opentelemetry-exporter-otlp-proto-grpc==1.34.1; extra == "frozen"
+Requires-Dist: opentelemetry-exporter-otlp-proto-http==1.34.1; extra == "frozen"
+Requires-Dist: opentelemetry-proto==1.34.1; extra == "frozen"
+Requires-Dist: opentelemetry-sdk==1.34.1; extra == "frozen"
+Requires-Dist: opentelemetry-semantic-conventions==0.55b1; extra == "frozen"
 Requires-Dist: ordered-set==4.1.0; extra == "frozen"
 Requires-Dist: packaging==25.0; extra == "frozen"
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 Requires-Dist: parfive==2.2.0; extra == "frozen"
 Requires-Dist: pathspec==0.12.1; extra == "frozen"
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 Requires-Dist: protobuf==5.29.5; extra == "frozen"
 Requires-Dist: psutil==7.0.0; extra == "frozen"
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 Requires-Dist: py==1.11.0; extra == "frozen"
 Requires-Dist: pycparser==2.22; extra == "frozen"
-Requires-Dist: pydantic==2.11.5; extra == "frozen"
+Requires-Dist: pydantic==2.11.7; extra == "frozen"
 Requires-Dist: pydantic-settings==2.9.1; extra == "frozen"
 Requires-Dist: pydantic_core==2.33.2; extra == "frozen"
 Requires-Dist: pyerfa==2.0.1.5; extra == "frozen"
@@ -251,7 +250,7 @@ Requires-Dist: python-slugify==8.0.4; extra == "frozen"
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 Requires-Dist: redis==4.6.0; extra == "frozen"
 Requires-Dist: referencing==0.36.2; extra == "frozen"
-Requires-Dist: requests==2.32.3; extra == "frozen"
+Requires-Dist: requests==2.32.4; extra == "frozen"
 Requires-Dist: requests-toolbelt==1.0.0; extra == "frozen"
 Requires-Dist: retry==0.9.2; extra == "frozen"
 Requires-Dist: rfc3339-validator==0.1.4; extra == "frozen"
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-Requires-Dist: tifffile==2025.6.1; extra == "frozen"
+Requires-Dist: tifffile==2025.6.11; extra == "frozen"
 Requires-Dist: tornado==6.5.1; extra == "frozen"
 Requires-Dist: tqdm==4.67.1; extra == "frozen"
 Requires-Dist: traitlets==5.14.3; extra == "frozen"
@@ -291,8 +290,8 @@ Requires-Dist: wcwidth==0.2.13; extra == "frozen"
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-Requires-Dist: yarl==1.20.0; extra == "frozen"
-Requires-Dist: zipp==3.22.0; extra == "frozen"
+Requires-Dist: yarl==1.20.1; extra == "frozen"
+Requires-Dist: zipp==3.23.0; extra == "frozen"
 
 dkist-processing-cryonirsp
 ==========================

dkist_processing_cryonirsp-1.8.0/SCIENCE_CHANGELOG.rst

@@ -0,0 +1,25 @@
+v1.8.0 (2025-06-16)
+===================
+
+Misc
+----
+
+- Update the beam alignment code to handle edge effects in determining the shift required to align beams one and two. The final spectra passed to the cross correlation method are now cropped by removing the outside 10% of pixels on each edge. (`#195 <https://bitbucket.org/dkistdc/dkist-processing-cryonirsp/pull-requests/195>`__)
+
+
+v1.0.0 (2024-08-21)
+===================
+
+Misc
+----
+
+- CRYO-NIRSP processing pipeline data accepted for release to the community.
+
+
+v0.0.1 (2023-08-25)
+===================
+
+Misc
+----
+
+- Initial release of pipeline for science review

{dkist_processing_cryonirsp-1.7.7rc1 → dkist_processing_cryonirsp-1.8.0}/dkist_processing_cryonirsp/tasks/mixin/shift_measurements.py

@@ -123,10 +123,16 @@ class ShiftMeasurementsMixin:
             array_2_strip, axis=array_2_axis_params.long_axis
         )
 
+        if axis == SPECTRAL:
+            # Chop 10% off of the edges of the spectra to remove known edge effects before determining shift.
+            tenth_of_length = array_1_gradient.shape[0] // 10
+            array_1_gradient = array_1_gradient[tenth_of_length:-tenth_of_length]
+            array_2_gradient = array_2_gradient[tenth_of_length:-tenth_of_length]
+
         # Correlate the gradient signals to get the shift of array 2 relative to array 1
         shift_array, error, phasediff = skir.phase_cross_correlation(
-            array_1_gradient,
-            array_2_gradient,
+            reference_image=array_1_gradient,
+            moving_image=array_2_gradient,
             upsample_factor=upsample_factor,
         )
         # Flip the sign to convert from correction to measurement.

{dkist_processing_cryonirsp-1.7.7rc1 → dkist_processing_cryonirsp-1.8.0}/dkist_processing_cryonirsp/tests/local_trial_workflows/local_trial_helpers.py

@@ -24,17 +24,17 @@ from dkist_processing_cryonirsp.tests.conftest import FileParameter
 
 # These are the workflow versions of the polyfit coefficient parameters
 WORKFLOW_LINEARIZATION_POLYFIT_COEFFS_CI = [
-    1.1565851e00,
-    -1.1925439e-05,
-    2.6748548e-10,
-    -2.7366326e-15,
+    1.10505215e00,
+    -7.50178863e-06,
+    1.43050375e-10,
+    -1.62898848e-15,
 ]
 
 WORKFLOW_LINEARIZATION_POLYFIT_COEFFS_SP = [
-    1.1421334e00,
-    -1.0536260e-05,
-    2.2702712e-10,
-    -2.5632187e-15,
+    1.14636662,
+    -1.05173302e-05,
+    2.18059789e-10,
+    -3.00894653e-15,
 ]
 
 

{dkist_processing_cryonirsp-1.7.7rc1 → dkist_processing_cryonirsp-1.8.0}/dkist_processing_cryonirsp.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: dkist-processing-cryonirsp
-Version: 1.7.7rc1
+Version: 1.8.0
 Summary: Science processing code for the Cryo-NIRSP instrument on DKIST
 Author-email: NSO / AURA <dkistdc@nso.edu>
 License: BSD-3-Clause
@@ -17,7 +17,7 @@ Requires-Dist: Pillow==10.4.0
 Requires-Dist: astropy==7.0.2
 Requires-Dist: dkist-fits-specifications==4.17.0
 Requires-Dist: dkist-header-validator==5.2.1
-Requires-Dist: dkist-processing-common==10.8.4rc1
+Requires-Dist: dkist-processing-common==10.9.0
 Requires-Dist: dkist-processing-math==2.2.0
 Requires-Dist: dkist-processing-pac==3.1.1
 Requires-Dist: dkist-spectral-lines==3.0.0
@@ -86,9 +86,9 @@ Requires-Dist: SQLAlchemy-JSONField==1.0.2; extra == "frozen"
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+Requires-Dist: aioftp==0.25.2; extra == "frozen"
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-Requires-Dist: aiohttp==3.12.6; extra == "frozen"
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 Requires-Dist: dkist-processing-core==5.1.1; extra == "frozen"
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 Requires-Dist: httpcore==1.0.9; extra == "frozen"
@@ -175,7 +174,7 @@ Requires-Dist: humanize==4.12.3; extra == "frozen"
 Requires-Dist: idna==3.10; extra == "frozen"
 Requires-Dist: imageio==2.37.0; extra == "frozen"
 Requires-Dist: imageio-ffmpeg==0.6.0; extra == "frozen"
-Requires-Dist: importlib_metadata==8.6.1; extra == "frozen"
+Requires-Dist: importlib_metadata==8.7.0; extra == "frozen"
 Requires-Dist: inflection==0.5.1; extra == "frozen"
 Requires-Dist: itsdangerous==2.2.0; extra == "frozen"
 Requires-Dist: jmespath==1.0.1; extra == "frozen"
@@ -187,7 +186,7 @@ Requires-Dist: kombu==5.5.4; extra == "frozen"
 Requires-Dist: largestinteriorrectangle==0.2.1; extra == "frozen"
 Requires-Dist: lazy-object-proxy==1.11.0; extra == "frozen"
 Requires-Dist: lazy_loader==0.4; extra == "frozen"
-Requires-Dist: limits==5.2.0; extra == "frozen"
+Requires-Dist: limits==5.3.0; extra == "frozen"
 Requires-Dist: linkify-it-py==2.0.3; extra == "frozen"
 Requires-Dist: llvmlite==0.44.0; extra == "frozen"
 Requires-Dist: lmfit==1.3.3; extra == "frozen"
@@ -209,17 +208,17 @@ Requires-Dist: networkx==3.5; extra == "frozen"
 Requires-Dist: numba==0.61.2; extra == "frozen"
 Requires-Dist: numpy==2.2.5; extra == "frozen"
 Requires-Dist: object-clerk==0.1.2; extra == "frozen"
-Requires-Dist: opentelemetry-api==1.33.1; extra == "frozen"
-Requires-Dist: opentelemetry-exporter-otlp==1.33.1; extra == "frozen"
-Requires-Dist: opentelemetry-exporter-otlp-proto-common==1.33.1; extra == "frozen"
-Requires-Dist: opentelemetry-exporter-otlp-proto-grpc==1.33.1; extra == "frozen"
-Requires-Dist: opentelemetry-exporter-otlp-proto-http==1.33.1; extra == "frozen"
-Requires-Dist: opentelemetry-proto==1.33.1; extra == "frozen"
-Requires-Dist: opentelemetry-sdk==1.33.1; extra == "frozen"
-Requires-Dist: opentelemetry-semantic-conventions==0.54b1; extra == "frozen"
+Requires-Dist: opentelemetry-api==1.34.1; extra == "frozen"
+Requires-Dist: opentelemetry-exporter-otlp==1.34.1; extra == "frozen"
+Requires-Dist: opentelemetry-exporter-otlp-proto-common==1.34.1; extra == "frozen"
+Requires-Dist: opentelemetry-exporter-otlp-proto-grpc==1.34.1; extra == "frozen"
+Requires-Dist: opentelemetry-exporter-otlp-proto-http==1.34.1; extra == "frozen"
+Requires-Dist: opentelemetry-proto==1.34.1; extra == "frozen"
+Requires-Dist: opentelemetry-sdk==1.34.1; extra == "frozen"
+Requires-Dist: opentelemetry-semantic-conventions==0.55b1; extra == "frozen"
 Requires-Dist: ordered-set==4.1.0; extra == "frozen"
 Requires-Dist: packaging==25.0; extra == "frozen"
-Requires-Dist: pandas==2.2.3; extra == "frozen"
+Requires-Dist: pandas==2.3.0; extra == "frozen"
 Requires-Dist: parfive==2.2.0; extra == "frozen"
 Requires-Dist: pathspec==0.12.1; extra == "frozen"
 Requires-Dist: pendulum==3.1.0; extra == "frozen"
@@ -232,13 +231,13 @@ Requires-Dist: prison==0.2.1; extra == "frozen"
 Requires-Dist: proglog==0.1.12; extra == "frozen"
 Requires-Dist: prometheus_client==0.22.1; extra == "frozen"
 Requires-Dist: prompt_toolkit==3.0.51; extra == "frozen"
-Requires-Dist: propcache==0.3.1; extra == "frozen"
+Requires-Dist: propcache==0.3.2; extra == "frozen"
 Requires-Dist: protobuf==5.29.5; extra == "frozen"
 Requires-Dist: psutil==7.0.0; extra == "frozen"
 Requires-Dist: psycopg2-binary==2.9.10; extra == "frozen"
 Requires-Dist: py==1.11.0; extra == "frozen"
 Requires-Dist: pycparser==2.22; extra == "frozen"
-Requires-Dist: pydantic==2.11.5; extra == "frozen"
+Requires-Dist: pydantic==2.11.7; extra == "frozen"
 Requires-Dist: pydantic-settings==2.9.1; extra == "frozen"
 Requires-Dist: pydantic_core==2.33.2; extra == "frozen"
 Requires-Dist: pyerfa==2.0.1.5; extra == "frozen"
@@ -251,7 +250,7 @@ Requires-Dist: python-slugify==8.0.4; extra == "frozen"
 Requires-Dist: pytz==2025.2; extra == "frozen"
 Requires-Dist: redis==4.6.0; extra == "frozen"
 Requires-Dist: referencing==0.36.2; extra == "frozen"
-Requires-Dist: requests==2.32.3; extra == "frozen"
+Requires-Dist: requests==2.32.4; extra == "frozen"
 Requires-Dist: requests-toolbelt==1.0.0; extra == "frozen"
 Requires-Dist: retry==0.9.2; extra == "frozen"
 Requires-Dist: rfc3339-validator==0.1.4; extra == "frozen"
@@ -274,7 +273,7 @@ Requires-Dist: talus==1.1.0; extra == "frozen"
 Requires-Dist: tenacity==9.1.2; extra == "frozen"
 Requires-Dist: termcolor==3.1.0; extra == "frozen"
 Requires-Dist: text-unidecode==1.3; extra == "frozen"
-Requires-Dist: tifffile==2025.6.1; extra == "frozen"
+Requires-Dist: tifffile==2025.6.11; extra == "frozen"
 Requires-Dist: tornado==6.5.1; extra == "frozen"
 Requires-Dist: tqdm==4.67.1; extra == "frozen"
 Requires-Dist: traitlets==5.14.3; extra == "frozen"
@@ -291,8 +290,8 @@ Requires-Dist: wcwidth==0.2.13; extra == "frozen"
 Requires-Dist: wirerope==1.0.0; extra == "frozen"
 Requires-Dist: wrapt==1.17.2; extra == "frozen"
 Requires-Dist: yamale==6.0.0; extra == "frozen"
-Requires-Dist: yarl==1.20.0; extra == "frozen"
-Requires-Dist: zipp==3.22.0; extra == "frozen"
+Requires-Dist: yarl==1.20.1; extra == "frozen"
+Requires-Dist: zipp==3.23.0; extra == "frozen"
 
 dkist-processing-cryonirsp
 ==========================

{dkist_processing_cryonirsp-1.7.7rc1 → dkist_processing_cryonirsp-1.8.0}/dkist_processing_cryonirsp.egg-info/SOURCES.txt

@@ -10,7 +10,6 @@ pyproject.toml
 science_towncrier.sh
 towncrier_science.toml
 changelog/.gitempty
-changelog/190.misc.rst
 dkist_processing_cryonirsp/__init__.py
 dkist_processing_cryonirsp/config.py
 dkist_processing_cryonirsp.egg-info/PKG-INFO

{dkist_processing_cryonirsp-1.7.7rc1 → dkist_processing_cryonirsp-1.8.0}/dkist_processing_cryonirsp.egg-info/requires.txt

@@ -2,7 +2,7 @@ Pillow==10.4.0
 astropy==7.0.2
 dkist-fits-specifications==4.17.0
 dkist-header-validator==5.2.1
-dkist-processing-common==10.8.4rc1
+dkist-processing-common==10.9.0
 dkist-processing-math==2.2.0
 dkist-processing-pac==3.1.1
 dkist-spectral-lines==3.0.0
@@ -54,9 +54,9 @@ SQLAlchemy-JSONField==1.0.2
 SQLAlchemy-Utils==0.41.2
 WTForms==3.2.1
 Werkzeug==2.2.3
-aioftp==0.25.1
+aioftp==0.25.2
 aiohappyeyeballs==2.6.1
-aiohttp==3.12.6
+aiohttp==3.12.13
 aiosignal==1.3.2
 alembic==1.16.1
 amqp==5.3.1
@@ -77,22 +77,22 @@ apache-airflow-providers-sqlite==4.1.0
 apispec==6.8.2
 argcomplete==3.6.2
 asdf==3.5.0
-asdf_standard==1.2.0
+asdf_standard==1.3.0
 asdf_transform_schemas==0.6.0
 asgiref==3.8.1
 asteval==1.0.6
 astropy==7.0.2
-astropy-iers-data==0.2025.6.2.0.38.23
+astropy-iers-data==0.2025.6.16.0.38.47
 asyncpg==0.30.0
 attrs==25.3.0
 babel==2.17.0
 billiard==4.2.1
 blinker==1.9.0
-boto3==1.38.27
-botocore==1.38.27
+boto3==1.38.36
+botocore==1.38.36
 cachelib==0.13.0
 celery==5.5.3
-certifi==2025.4.26
+certifi==2025.6.15
 cffi==1.17.1
 charset-normalizer==3.4.2
 click==8.2.1
@@ -106,15 +106,15 @@ connexion==2.14.2
 contourpy==1.3.2
 cron-descriptor==1.4.5
 croniter==6.0.0
-cryptography==45.0.3
+cryptography==45.0.4
 cycler==0.12.1
 dacite==1.9.2
 decorator==5.2.1
 dill==0.4.0
 dkist-header-validator==5.2.1
-dkist-processing-common==10.8.4rc1
+dkist-processing-common==10.9.0
 dkist-processing-core==5.1.1
-dkist-processing-cryonirsp==1.7.7rc1
+dkist-processing-cryonirsp==1.8.0
 dkist-processing-math==2.2.0
 dkist-processing-pac==3.1.1
 dkist-service-configuration==2.2
@@ -126,15 +126,14 @@ elastic-apm==6.23.0
 email_validator==2.2.0
 fastjsonschema==2.21.1
 flower==2.0.1
-fonttools==4.58.1
-frozenlist==1.6.0
+fonttools==4.58.4
+frozenlist==1.7.0
 fsspec==2025.5.1
-globus-sdk==3.56.1
+globus-sdk==3.57.0
 google-re2==1.1.20240702
 googleapis-common-protos==1.70.0
 gqlclient==1.2.3
-greenlet==3.2.2
-grpcio==1.72.1
+grpcio==1.73.0
 gunicorn==23.0.0
 h11==0.16.0
 httpcore==1.0.9
@@ -143,7 +142,7 @@ humanize==4.12.3
 idna==3.10
 imageio==2.37.0
 imageio-ffmpeg==0.6.0
-importlib_metadata==8.6.1
+importlib_metadata==8.7.0
 inflection==0.5.1
 itsdangerous==2.2.0
 jmespath==1.0.1
@@ -155,7 +154,7 @@ kombu==5.5.4
 largestinteriorrectangle==0.2.1
 lazy-object-proxy==1.11.0
 lazy_loader==0.4
-limits==5.2.0
+limits==5.3.0
 linkify-it-py==2.0.3
 llvmlite==0.44.0
 lmfit==1.3.3
@@ -177,17 +176,17 @@ networkx==3.5
 numba==0.61.2
 numpy==2.2.5
 object-clerk==0.1.2
-opentelemetry-api==1.33.1
-opentelemetry-exporter-otlp==1.33.1
-opentelemetry-exporter-otlp-proto-common==1.33.1
-opentelemetry-exporter-otlp-proto-grpc==1.33.1
-opentelemetry-exporter-otlp-proto-http==1.33.1
-opentelemetry-proto==1.33.1
-opentelemetry-sdk==1.33.1
-opentelemetry-semantic-conventions==0.54b1
+opentelemetry-api==1.34.1
+opentelemetry-exporter-otlp==1.34.1
+opentelemetry-exporter-otlp-proto-common==1.34.1
+opentelemetry-exporter-otlp-proto-grpc==1.34.1
+opentelemetry-exporter-otlp-proto-http==1.34.1
+opentelemetry-proto==1.34.1
+opentelemetry-sdk==1.34.1
+opentelemetry-semantic-conventions==0.55b1
 ordered-set==4.1.0
 packaging==25.0
-pandas==2.2.3
+pandas==2.3.0
 parfive==2.2.0
 pathspec==0.12.1
 pendulum==3.1.0
@@ -200,13 +199,13 @@ prison==0.2.1
 proglog==0.1.12
 prometheus_client==0.22.1
 prompt_toolkit==3.0.51
-propcache==0.3.1
+propcache==0.3.2
 protobuf==5.29.5
 psutil==7.0.0
 psycopg2-binary==2.9.10
 py==1.11.0
 pycparser==2.22
-pydantic==2.11.5
+pydantic==2.11.7
 pydantic-settings==2.9.1
 pydantic_core==2.33.2
 pyerfa==2.0.1.5
@@ -219,7 +218,7 @@ python-slugify==8.0.4
 pytz==2025.2
 redis==4.6.0
 referencing==0.36.2
-requests==2.32.3
+requests==2.32.4
 requests-toolbelt==1.0.0
 retry==0.9.2
 rfc3339-validator==0.1.4
@@ -242,7 +241,7 @@ talus==1.1.0
 tenacity==9.1.2
 termcolor==3.1.0
 text-unidecode==1.3
-tifffile==2025.6.1
+tifffile==2025.6.11
 tornado==6.5.1
 tqdm==4.67.1
 traitlets==5.14.3
@@ -259,8 +258,8 @@ wcwidth==0.2.13
 wirerope==1.0.0
 wrapt==1.17.2
 yamale==6.0.0
-yarl==1.20.0
-zipp==3.22.0
+yarl==1.20.1
+zipp==3.23.0
 
 [grogu]
 dkist