dkist-processing-cryonirsp 1.4.7rc2__tar.gz → 1.4.9rc1__tar.gz

dkist_processing_cryonirsp-1.4.9rc1/.snyk

@@ -0,0 +1,3 @@
+# Snyk (https://snyk.io) policy file, patches or ignores known vulnerabilities
+# https://docs.snyk.io/manage-risk/policies/the-.snyk-file#syntax-of-the-.snyk-file
+version: v1.25.0

{dkist_processing_cryonirsp-1.4.7rc2 → dkist_processing_cryonirsp-1.4.9rc1}/CHANGELOG.rst

@@ -1,3 +1,27 @@
+v1.4.8 (2024-12-20)
+===================
+
+Documentation
+-------------
+
+- Change the documentation landing page to focus more on users and less on developers. (`#164 <https://bitbucket.org/dkistdc/dkist-processing-cryonirsp/pull-requests/164>`__)
+
+
+v1.4.7 (2024-12-18)
+===================
+
+Features
+--------
+
+- Bump common to remove Fried parameter from the L1 headers and the quality metrics where the AO system is unlocked. (`#166 <https://bitbucket.org/dkistdc/dkist-processing-cryonirsp/pull-requests/166>`__)
+
+
+Misc
+----
+
+- Update Bitbucket pipelines to use standardized lint and scan steps. (`#165 <https://bitbucket.org/dkistdc/dkist-processing-cryonirsp/pull-requests/165>`__)
+
+
 v1.4.6 (2024-12-05)
 ===================
 

{dkist_processing_cryonirsp-1.4.7rc2 → dkist_processing_cryonirsp-1.4.9rc1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dkist-processing-cryonirsp
-Version: 1.4.7rc2
+Version: 1.4.9rc1
 Summary: Science processing code for the Cryo-NIRSP instrument on DKIST
 Author-email: NSO / AURA <dkistdc@nso.edu>
 License: BSD-3-Clause
@@ -17,9 +17,9 @@ Requires-Dist: Pillow==10.3.0
 Requires-Dist: astropy==6.1.0
 Requires-Dist: dkist-fits-specifications==4.10.0
 Requires-Dist: dkist-header-validator==5.1.1
-Requires-Dist: dkist-processing-common==v10.5.4rc3
-Requires-Dist: dkist-processing-math==2.1.1
-Requires-Dist: dkist-processing-pac==3.1.0
+Requires-Dist: dkist-processing-common==10.5.5
+Requires-Dist: dkist-processing-math==2.1.2
+Requires-Dist: dkist-processing-pac==3.1.1
 Requires-Dist: dkist-spectral-lines==3.0.0
 Requires-Dist: largestinteriorrectangle==0.2.0
 Requires-Dist: dkist-service-configuration==2.2
@@ -43,16 +43,16 @@ Requires-Dist: dkist-processing-cryonirsp[asdf]; extra == "test"
 Requires-Dist: dkist-processing-cryonirsp[quality]; extra == "test"
 Provides-Extra: inventory
 Requires-Dist: dkist-processing-common[inventory]; extra == "inventory"
-Requires-Dist: dkist-inventory==1.4.4rc1; extra == "inventory"
+Requires-Dist: dkist-inventory==1.4.4; extra == "inventory"
 Provides-Extra: asdf
 Requires-Dist: dkist-processing-common[asdf]; extra == "asdf"
-Requires-Dist: dkist-inventory[asdf]==1.4.4rc1; extra == "asdf"
+Requires-Dist: dkist-inventory[asdf]==1.4.4; extra == "asdf"
 Provides-Extra: quality
-Requires-Dist: dkist-quality==v1.2.0rc1; extra == "quality"
+Requires-Dist: dkist-quality==1.2.0; extra == "quality"
 Provides-Extra: grogu
 Requires-Dist: dkist; extra == "grogu"
 Requires-Dist: pyparsing; extra == "grogu"
-Requires-Dist: dkist-inventory>=1.4.4rc1; extra == "grogu"
+Requires-Dist: dkist-inventory>=1.4.4; extra == "grogu"
 Provides-Extra: docs
 Requires-Dist: sphinx; extra == "docs"
 Requires-Dist: sphinx-astropy; extra == "docs"
@@ -88,7 +88,7 @@ e.g. dkist-processing-test -> dkist-processing-vbi and dkist_processing_test ->
 
 Deployment
 ----------
-Deployment is done with `turtlebot <https://bitbucket.org/dkistdc/turtlebot/src/master/>`_ and follows
+Deployment is done with `turtlebot <https://bitbucket.org/dkistdc/turtlebot/src/main/>`_ and follows
 the process detailed in `dkist-processing-core <https://pypi.org/project/dkist-processing-core/>`_
 
 Environment Variables

{dkist_processing_cryonirsp-1.4.7rc2 → dkist_processing_cryonirsp-1.4.9rc1}/README.rst

@@ -24,7 +24,7 @@ e.g. dkist-processing-test -> dkist-processing-vbi and dkist_processing_test ->
 
 Deployment
 ----------
-Deployment is done with `turtlebot <https://bitbucket.org/dkistdc/turtlebot/src/master/>`_ and follows
+Deployment is done with `turtlebot <https://bitbucket.org/dkistdc/turtlebot/src/main/>`_ and follows
 the process detailed in `dkist-processing-core <https://pypi.org/project/dkist-processing-core/>`_
 
 Environment Variables

{dkist_processing_cryonirsp-1.4.7rc2 → dkist_processing_cryonirsp-1.4.9rc1}/bitbucket-pipelines.yml

@@ -11,10 +11,12 @@ definitions:
           - pip
         name: Lint
         script:
-          - pip install -U pip
-          - pip install pre-commit
-          - pre-commit install
-          - pre-commit run --all-files
+          - echo "Retrieving and Executing Lint Script"
+          - curl -fL https://getcli.jfrog.io | sh
+          - ./jfrog rt dl --url $ARTIFACTORY_URL --user $ARTIFACTORY_USER --password $ARTIFACTORY_PASSWORD generic-packages/ci_scripts/latest/lint_python.sh
+          - cat ci_scripts/latest/lint_python.sh
+          - chmod 755 ci_scripts/latest/lint_python.sh
+          - ./ci_scripts/latest/lint_python.sh
     - step: &changelog
         caches:
           - pip
@@ -30,19 +32,12 @@ definitions:
           - pip
         name: Scan
         script:
-          - pip install -U pip
-          - pip install -e .
-          - pip freeze | grep -v @ > requirements.txt
-          - cat requirements.txt
-          - echo $SNYK_VERSION
-          - curl -L -o snyk https://github.com/snyk/snyk/releases/download/$SNYK_VERSION/snyk-linux
-          - chmod 755 snyk
-          - ./snyk -d auth $SNYK_TOKEN
-          - echo $SNYK_IGNORE
-          - for id in $SNYK_IGNORE; do echo Ignoring $id; ./snyk ignore $id; done
-          - cat .snyk || echo "No .snyk found. Probably because there was nothing to ignore."
-          - echo $SNYK_CLI_COMMAND
-          - $SNYK_CLI_COMMAND
+          - echo "Retrieving and Executing Scan Script"
+          - curl -fL https://getcli.jfrog.io | sh
+          - ./jfrog rt dl --url $ARTIFACTORY_URL --user $ARTIFACTORY_USER --password $ARTIFACTORY_PASSWORD generic-packages/ci_scripts/latest/scan_python.sh
+          - cat ci_scripts/latest/scan_python.sh
+          - chmod 755 ci_scripts/latest/scan_python.sh
+          - ./ci_scripts/latest/scan_python.sh
     - step: &test
         caches:
           - pip

dkist_processing_cryonirsp-1.4.9rc1/changelog/161.bugfix.rst

@@ -0,0 +1 @@
+Change units of the grating constant used in calculations as well as in the L1 headers from `mm^-1` to `m^-1`.

{dkist_processing_cryonirsp-1.4.7rc2 → dkist_processing_cryonirsp-1.4.9rc1}/dkist_processing_cryonirsp/parsers/cryonirsp_l0_fits_access.py

@@ -96,7 +96,8 @@ class CryonirspL0FitsAccess(L0FitsAccess):
         )
         self.grating_position_deg: float = self.header["CNGRTPOS"]
         self.grating_littrow_angle_deg: float = self.header["CNGRTLAT"]
-        self.grating_constant: float = self.header["CNGRTCON"]
+        # grating_constant is in the L0 header in (mm)^(-1) when needed in (m)^(-1) hence multiply by 1000.
+        self.grating_constant: float = self.header["CNGRTCON"] * 1000
         self.obs_ip_start_time = self.header["DKIST011"]
         # The ExposureConditions are a combination of the exposure time and the OD filter name:
         self.exposure_conditions = ExposureConditions(

{dkist_processing_cryonirsp-1.4.7rc2 → dkist_processing_cryonirsp-1.4.9rc1}/dkist_processing_cryonirsp/tasks/sp_dispersion_axis_correction.py

@@ -161,7 +161,7 @@ class SPDispersionAxisCorrection(CryonirspTaskBase, InputDatasetMixin):
         grating_littrow_angle_theta = np.deg2rad(self.constants.grating_littrow_angle_deg)
         alpha = grating_position_angle_phi + grating_littrow_angle_theta
         beta = grating_position_angle_phi - grating_littrow_angle_theta
-        grating_spacing_distance = (1.0 / self.constants.grating_constant) * u.millimeter
+        grating_spacing_distance = (1.0 / self.constants.grating_constant) * u.m
         order = int(grating_spacing_distance / wavelength * (np.sin(alpha) + np.sin(beta)))
         camera_mirror_focal_length = self.parameters.camera_mirror_focal_length_mm
         pixpitch = self.parameters.pixel_pitch_micron

{dkist_processing_cryonirsp-1.4.7rc2 → dkist_processing_cryonirsp-1.4.9rc1}/dkist_processing_cryonirsp.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dkist-processing-cryonirsp
-Version: 1.4.7rc2
+Version: 1.4.9rc1
 Summary: Science processing code for the Cryo-NIRSP instrument on DKIST
 Author-email: NSO / AURA <dkistdc@nso.edu>
 License: BSD-3-Clause
@@ -17,9 +17,9 @@ Requires-Dist: Pillow==10.3.0
 Requires-Dist: astropy==6.1.0
 Requires-Dist: dkist-fits-specifications==4.10.0
 Requires-Dist: dkist-header-validator==5.1.1
-Requires-Dist: dkist-processing-common==v10.5.4rc3
-Requires-Dist: dkist-processing-math==2.1.1
-Requires-Dist: dkist-processing-pac==3.1.0
+Requires-Dist: dkist-processing-common==10.5.5
+Requires-Dist: dkist-processing-math==2.1.2
+Requires-Dist: dkist-processing-pac==3.1.1
 Requires-Dist: dkist-spectral-lines==3.0.0
 Requires-Dist: largestinteriorrectangle==0.2.0
 Requires-Dist: dkist-service-configuration==2.2
@@ -43,16 +43,16 @@ Requires-Dist: dkist-processing-cryonirsp[asdf]; extra == "test"
 Requires-Dist: dkist-processing-cryonirsp[quality]; extra == "test"
 Provides-Extra: inventory
 Requires-Dist: dkist-processing-common[inventory]; extra == "inventory"
-Requires-Dist: dkist-inventory==1.4.4rc1; extra == "inventory"
+Requires-Dist: dkist-inventory==1.4.4; extra == "inventory"
 Provides-Extra: asdf
 Requires-Dist: dkist-processing-common[asdf]; extra == "asdf"
-Requires-Dist: dkist-inventory[asdf]==1.4.4rc1; extra == "asdf"
+Requires-Dist: dkist-inventory[asdf]==1.4.4; extra == "asdf"
 Provides-Extra: quality
-Requires-Dist: dkist-quality==v1.2.0rc1; extra == "quality"
+Requires-Dist: dkist-quality==1.2.0; extra == "quality"
 Provides-Extra: grogu
 Requires-Dist: dkist; extra == "grogu"
 Requires-Dist: pyparsing; extra == "grogu"
-Requires-Dist: dkist-inventory>=1.4.4rc1; extra == "grogu"
+Requires-Dist: dkist-inventory>=1.4.4; extra == "grogu"
 Provides-Extra: docs
 Requires-Dist: sphinx; extra == "docs"
 Requires-Dist: sphinx-astropy; extra == "docs"
@@ -88,7 +88,7 @@ e.g. dkist-processing-test -> dkist-processing-vbi and dkist_processing_test ->
 
 Deployment
 ----------
-Deployment is done with `turtlebot <https://bitbucket.org/dkistdc/turtlebot/src/master/>`_ and follows
+Deployment is done with `turtlebot <https://bitbucket.org/dkistdc/turtlebot/src/main/>`_ and follows
 the process detailed in `dkist-processing-core <https://pypi.org/project/dkist-processing-core/>`_
 
 Environment Variables

{dkist_processing_cryonirsp-1.4.7rc2 → dkist_processing_cryonirsp-1.4.9rc1}/dkist_processing_cryonirsp.egg-info/SOURCES.txt

@@ -1,6 +1,7 @@
 .gitignore
 .pre-commit-config.yaml
 .readthedocs.yml
+.snyk
 CHANGELOG.rst
 README.rst
 SCIENCE_CHANGELOG.rst
@@ -10,7 +11,7 @@ pyproject.toml
 science_towncrier.sh
 towncrier_science.toml
 changelog/.gitempty
-changelog/165.feature.rst
+changelog/161.bugfix.rst
 dkist_processing_cryonirsp/__init__.py
 dkist_processing_cryonirsp/config.py
 dkist_processing_cryonirsp.egg-info/PKG-INFO
@@ -114,6 +115,7 @@ docs/l0_to_l1_cryonirsp_ci-full-trial.rst
 docs/l0_to_l1_cryonirsp_ci.rst
 docs/l0_to_l1_cryonirsp_sp-full-trial.rst
 docs/l0_to_l1_cryonirsp_sp.rst
+docs/landing_page.rst
 docs/linearization.rst
 docs/make.bat
 docs/requirements.txt

{dkist_processing_cryonirsp-1.4.7rc2 → dkist_processing_cryonirsp-1.4.9rc1}/dkist_processing_cryonirsp.egg-info/requires.txt

@@ -2,9 +2,9 @@ Pillow==10.3.0
 astropy==6.1.0
 dkist-fits-specifications==4.10.0
 dkist-header-validator==5.1.1
-dkist-processing-common==v10.5.4rc3
-dkist-processing-math==2.1.1
-dkist-processing-pac==3.1.0
+dkist-processing-common==10.5.5
+dkist-processing-math==2.1.2
+dkist-processing-pac==3.1.1
 dkist-spectral-lines==3.0.0
 largestinteriorrectangle==0.2.0
 dkist-service-configuration==2.2
@@ -18,7 +18,7 @@ sunpy==5.1.3
 
 [asdf]
 dkist-processing-common[asdf]
-dkist-inventory[asdf]==1.4.4rc1
+dkist-inventory[asdf]==1.4.4
 
 [docs]
 sphinx
@@ -32,14 +32,14 @@ dkist-sphinx-theme
 [grogu]
 dkist
 pyparsing
-dkist-inventory>=1.4.4rc1
+dkist-inventory>=1.4.4
 
 [inventory]
 dkist-processing-common[inventory]
-dkist-inventory==1.4.4rc1
+dkist-inventory==1.4.4
 
 [quality]
-dkist-quality==v1.2.0rc1
+dkist-quality==1.2.0
 
 [test]
 pytest

{dkist_processing_cryonirsp-1.4.7rc2 → dkist_processing_cryonirsp-1.4.9rc1}/docs/index.rst

@@ -1,4 +1,4 @@
-.. include:: ../README.rst
+.. include:: landing_page.rst
 
 .. toctree::
     :maxdepth: 2

dkist_processing_cryonirsp-1.4.9rc1/docs/landing_page.rst

@@ -0,0 +1,17 @@
+Overview
+========
+
+The mission of the Cryogenic Near-IR Spectropolarimeter (Cryo-NIRSP) is to measure the full state of
+polarization of spectral lines at near- and thermal-infrared wavelengths.  It measures the relatively
+faint infrared corona and heliosphere, as well as the thermal infrared solar spectrum on disk. Cryo-NIRSP
+has two arms: one scanning slit spectrograph and one imager; both can operate in a polarimetric mode.
+
+The `dkist-processing-cryonirsp` code repository contains the implementation of the Cryo-NIRSP
+calibration pipelines, which convert Level 0 files from the telescope into Level 1 output products.
+Pipelines are built on `dkist-processing-common <https://docs.dkist.nso.edu/projects/common/>`_
+tasks and use the `dkist-processing-core <https://docs.dkist.nso.edu/projects/core/>`_ framework.
+Follow links on this page for more information about calibration pipelines.
+
+Level 1 data products are available at the `DKIST Data Portal <https://dkist.data.nso.edu/>`_ and can
+be analyzed with `DKIST python user tools <https://docs.dkist.nso.edu/projects/python-tools/>`_.  For
+help, please contact the `DKIST Help Desk <https://nso.atlassian.net/servicedesk/customer/portals/>`_.

{dkist_processing_cryonirsp-1.4.7rc2 → dkist_processing_cryonirsp-1.4.9rc1}/pyproject.toml

@@ -25,9 +25,9 @@ dependencies = [
   "astropy == 6.1.0",
   "dkist-fits-specifications == 4.10.0",
   "dkist-header-validator == 5.1.1",
-  "dkist-processing-common == v10.5.4rc3",
-  "dkist-processing-math == 2.1.1",
-  "dkist-processing-pac == 3.1.0",
+  "dkist-processing-common == 10.5.5",
+  "dkist-processing-math == 2.1.2",
+  "dkist-processing-pac == 3.1.1",
   "dkist-spectral-lines == 3.0.0",
   "largestinteriorrectangle == 0.2.0",
   "dkist-service-configuration == 2.2",
@@ -61,19 +61,19 @@ test = [
 ]
 inventory = [
   "dkist-processing-common[inventory]",
-  "dkist-inventory==1.4.4rc1",
+  "dkist-inventory==1.4.4",
 ]
 asdf = [
   "dkist-processing-common[asdf]",
-  "dkist-inventory[asdf]==1.4.4rc1",
+  "dkist-inventory[asdf]==1.4.4",
 ]
 quality = [
-  "dkist-quality==v1.2.0rc1",
+  "dkist-quality==1.2.0",
 ]
 grogu = [
   "dkist",
   "pyparsing",
-  "dkist-inventory >= 1.4.4rc1",
+  "dkist-inventory >= 1.4.4",
 ]
 docs = [
   "sphinx",

dkist_processing_cryonirsp-1.4.7rc2/changelog/165.feature.rst

@@ -1 +0,0 @@
-Bump common to remove Fried parameter when the AO system is unlocked.