dkist-processing-cryonirsp 1.12.1rc3__tar.gz → 1.12.3__tar.gz

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/.pre-commit-config.yaml

@@ -11,14 +11,14 @@ repos:
         args: [--maxkb=700]
     -   id: debug-statements
 -   repo: https://github.com/psf/black
-    rev: 23.1.0
+    rev: 25.1.0
     hooks:
     -   id: black
-        args: [ "-l 100" ]
--   repo: https://github.com/asottile/reorder_python_imports
-    rev: v3.9.0
+-   repo: https://github.com/pycqa/isort
+    rev: 5.12.0
     hooks:
-    -   id: reorder-python-imports
+    -   id: isort
+        name: isort (python)
 -   repo: https://github.com/pycqa/pydocstyle
     rev: 6.3.0
     hooks:

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/CHANGELOG.rst

@@ -1,3 +1,39 @@
+v1.12.3 (2025-09-03)
+====================
+
+Misc
+----
+
+- Bump `dkist-inventory` to v1.10.0. This removes an inventory-generation code branch for now-deprecated VBI data. (`#218 <https://bitbucket.org/dkistdc/dkist-processing-cryonirsp/pull-requests/218>`__)
+
+
+v1.12.2 (2025-09-02)
+====================
+
+Bugfixes
+--------
+
+- Update CADENCE-related and XPOSURE headers to take the instrument mode into account. (`#216 <https://bitbucket.org/dkistdc/dkist-processing-cryonirsp/pull-requests/216>`__)
+
+
+Misc
+----
+
+- Update `dkist-processing-common` to allow instrument level changes to cadence-related keywords when writing L1 data. (`#216 <https://bitbucket.org/dkistdc/dkist-processing-cryonirsp/pull-requests/216>`__)
+- Update `dkist-processing-math` to remove a deprecated package dependency. (`#216 <https://bitbucket.org/dkistdc/dkist-processing-cryonirsp/pull-requests/216>`__)
+- Update pre-commit hook versions and replace python-reorder-imports with isort. (`#217 <https://bitbucket.org/dkistdc/dkist-processing-cryonirsp/pull-requests/217>`__)
+
+
+v1.12.1 (2025-08-12)
+====================
+
+Misc
+----
+
+- Update verion of `dkist-processing-common` to v11.2.1 to fix bug that caused Wavecal quality metrics to not be rendered in Quality Reports.
+  Also bump `dkist-quality` to v2.0.0 for the same reason. (`#215 <https://bitbucket.org/dkistdc/dkist-processing-cryonirsp/pull-requests/215>`__)
+
+
 v1.12.0 (2025-07-30)
 ====================
 

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: dkist-processing-cryonirsp
-Version: 1.12.1rc3
+Version: 1.12.3
 Summary: Science processing code for the Cryo-NIRSP instrument on DKIST
 Author-email: NSO / AURA <dkistdc@nso.edu>
 License: BSD-3-Clause
@@ -17,8 +17,8 @@ Requires-Dist: Pillow==10.4.0
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 Requires-Dist: dkist-fits-specifications==4.17.0
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@@ -44,16 +44,16 @@ Requires-Dist: dkist-processing-cryonirsp[asdf]; extra == "test"
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{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/__init__.py

@@ -1,4 +1,5 @@
 """Init."""
+
 from importlib.metadata import PackageNotFoundError
 from importlib.metadata import version
 

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/codecs/fits.py

@@ -1,4 +1,5 @@
 """Encoders and decoders for writing and reading Cryo-NIRSP FITS files."""
+
 from pathlib import Path
 
 import numpy as np

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/config.py

@@ -1,4 +1,5 @@
 """Configuration for the dkist-processing-cryonirsp package and the logging thereof."""
+
 from dkist_processing_common.config import DKISTProcessingCommonConfiguration
 from pydantic import Field
 

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/models/beam_boundaries.py

@@ -1,4 +1,5 @@
 """Beam boundary class."""
+
 from dataclasses import dataclass
 
 import numpy as np

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/models/constants.py

@@ -1,4 +1,5 @@
 """CryoNIRSP additions to common constants."""
+
 from enum import Enum
 from enum import unique
 

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/models/exposure_conditions.py

@@ -1,4 +1,5 @@
 """Support classes for exposure conditions."""
+
 from collections import namedtuple
 from enum import StrEnum
 

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/models/parameters.py

@@ -1,4 +1,5 @@
 """CryoNIRSP calibration pipeline parameters."""
+
 from datetime import datetime
 from functools import cached_property
 

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/models/tags.py

@@ -1,4 +1,5 @@
 """CryoNIRSP tags."""
+
 from enum import Enum
 
 from dkist_processing_common.models.tags import StemName

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/models/task_name.py

@@ -1,4 +1,5 @@
 """List of intermediate task names."""
+
 from enum import Enum
 
 

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/parsers/check_for_gains.py

@@ -1,4 +1,5 @@
 """Pickybud to check for lamp gain and solar gain frames."""
+
 from typing import Hashable
 from typing import Type
 

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/parsers/cryonirsp_l0_fits_access.py

@@ -1,4 +1,5 @@
 """CryoNIRSP FITS access for L0 data."""
+
 import numpy as np
 from astropy.io import fits
 from dkist_processing_common.parsers.l0_fits_access import L0FitsAccess

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/parsers/cryonirsp_l1_fits_access.py

@@ -1,4 +1,5 @@
 """CryoNIRSP FITS access for L1 data."""
+
 from astropy.io import fits
 from dkist_processing_common.parsers.l1_fits_access import L1FitsAccess
 

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/parsers/exposure_conditions.py

@@ -1,4 +1,5 @@
 """Buds to parse the combination of exposure time and filter name."""
+
 from collections import namedtuple
 from typing import Hashable
 from typing import Type

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/parsers/map_repeats.py

@@ -1,4 +1,5 @@
 """Stems for organizing files into separate dsps repeats."""
+
 from dkist_processing_cryonirsp.models.constants import CryonirspBudName
 from dkist_processing_cryonirsp.models.tags import CryonirspStemName
 from dkist_processing_cryonirsp.parsers.scan_step import MapScanStepStemBase

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/parsers/measurements.py

@@ -1,4 +1,5 @@
 """Copies of UniqueBud and SingleValueSingleKeyFlower from common that only activate if the frames are "observe" task."""
+
 from typing import Hashable
 from typing import Type
 

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/parsers/modstates.py

@@ -1,4 +1,5 @@
 """Copy of SingleValueSingleKeyFlower from common that only activates if the frames are "observe" task."""
+
 from typing import Type
 
 from dkist_processing_common.models.flower_pot import SpilledDirt

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/parsers/optical_density_filters.py

@@ -1,4 +1,5 @@
 """PickyBud to implement early parsing of Optical Density Filter Names."""
+
 from typing import Hashable
 
 from dkist_processing_common.models.flower_pot import Stem

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/parsers/polarimetric_check.py

@@ -1,4 +1,5 @@
 """Copy of UniqueBud from common that only activates if the frames are polarimetric "observe" or "polcal" task, or non-polarimetric "observe" task."""
+
 from collections import namedtuple
 from typing import Type
 

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/parsers/scan_step.py

@@ -3,6 +3,7 @@ Machinery for sorting files based on scan step.
 
 Also includes base classes that can be used to sort files based on map scan.
 """
+
 ######################
 # HOW THIS ALL WORKS #
 ######################

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/parsers/time.py

@@ -1,4 +1,5 @@
 """Buds to parse exposure time."""
+
 from typing import Hashable
 from typing import Type
 

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/parsers/wavelength.py

@@ -1,4 +1,5 @@
 """CryoNIRSP bud to get the wavelength."""
+
 from dkist_processing_common.models.flower_pot import SpilledDirt
 from dkist_processing_common.parsers.unique_bud import UniqueBud
 

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/tasks/__init__.py

@@ -1,4 +1,5 @@
 """Init."""
+
 from dkist_processing_cryonirsp.tasks.assemble_movie import *
 from dkist_processing_cryonirsp.tasks.bad_pixel_map import *
 from dkist_processing_cryonirsp.tasks.ci_beam_boundaries import *

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/tasks/assemble_movie.py

@@ -1,4 +1,5 @@
 """CryoNIRSP-specific assemble movie task subclass."""
+
 import numpy as np
 from dkist_processing_common.tasks import AssembleMovie
 from dkist_service_configuration.logging import logger

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/tasks/bad_pixel_map.py

@@ -1,4 +1,5 @@
 """Task class for bad pixel map computation."""
+
 import numpy as np
 import scipy.ndimage as spnd
 from dkist_processing_common.codecs.fits import fits_array_encoder

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/tasks/beam_boundaries_base.py

@@ -1,4 +1,5 @@
 """CryoNIRSP compute beam boundary task."""
+
 from abc import abstractmethod
 
 import numpy as np

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/tasks/ci_beam_boundaries.py

@@ -1,4 +1,5 @@
 """Cryonirsp CI beam boundaries task."""
+
 import largestinteriorrectangle as lir
 import numpy as np
 from dkist_service_configuration.logging import logger

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/tasks/ci_science.py

@@ -1,4 +1,5 @@
 """Cryonirsp CI science calibration task."""
+
 from collections import defaultdict
 
 from dkist_service_configuration.logging import logger

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/tasks/cryonirsp_base.py

@@ -1,4 +1,5 @@
 """CryoNIRSP base class."""
+
 from abc import ABC
 
 from dkist_processing_common.tasks import WorkflowTaskBase

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/tasks/dark.py

@@ -1,4 +1,5 @@
 """CryoNIRSP dark calibration task."""
+
 from dkist_processing_common.codecs.fits import fits_array_encoder
 from dkist_processing_common.models.task_name import TaskName
 from dkist_processing_math.statistics import average_numpy_arrays

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/tasks/gain.py

@@ -1,4 +1,5 @@
 """Cryo gain task."""
+
 from abc import abstractmethod
 
 import numpy as np

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/tasks/instrument_polarization.py

@@ -1,4 +1,5 @@
 """Cryo instrument polarization task."""
+
 from abc import ABC
 from abc import abstractmethod
 from collections import defaultdict

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/tasks/l1_output_data.py

@@ -1,4 +1,5 @@
 """Subclasses of AssembleQualityData that cause the correct polcal metrics to build."""
+
 from typing import Type
 
 from dkist_processing_common.tasks import AssembleQualityData

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/tasks/linearity_correction.py

@@ -1,4 +1,5 @@
 """CryoNIRSP Linearity Correction Task."""
+
 from dataclasses import dataclass
 from typing import Generator
 

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/tasks/make_movie_frames.py

@@ -1,4 +1,5 @@
 """Cryonirsp make movie frames task."""
+
 from abc import ABC
 from abc import abstractmethod
 

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/tasks/mixin/corrections.py

@@ -1,4 +1,5 @@
 """Helper for CRYO-Nirsp array corrections."""
+
 from collections.abc import Generator
 from collections.abc import Iterable
 

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/tasks/mixin/shift_measurements.py

@@ -1,4 +1,5 @@
 """Mixin to support array shift calculations."""
+
 import math
 from dataclasses import dataclass
 

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/tasks/quality_metrics.py

@@ -1,4 +1,5 @@
 """Cryonirsp quality metrics task."""
+
 from dataclasses import dataclass
 from dataclasses import field
 from typing import Generator

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/tasks/science_base.py

@@ -1,4 +1,5 @@
 """Base frameworks for Cryonirsp science calibration."""
+
 from abc import ABC
 from abc import abstractmethod
 from collections.abc import Iterable

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/tasks/sp_beam_boundaries.py

@@ -1,4 +1,5 @@
 """Cryonirsp SP beam boundaries task."""
+
 import math
 
 import numpy as np
@@ -6,9 +7,9 @@ from dkist_service_configuration.logging import logger
 
 from dkist_processing_cryonirsp.models.beam_boundaries import BeamBoundary
 from dkist_processing_cryonirsp.tasks.beam_boundaries_base import BeamBoundariesCalibrationBase
-from dkist_processing_cryonirsp.tasks.mixin.shift_measurements import ShiftMeasurementsMixin
 from dkist_processing_cryonirsp.tasks.mixin.shift_measurements import SPATIAL
 from dkist_processing_cryonirsp.tasks.mixin.shift_measurements import SPECTRAL
+from dkist_processing_cryonirsp.tasks.mixin.shift_measurements import ShiftMeasurementsMixin
 
 __all__ = ["SPBeamBoundariesCalibration"]
 

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/tasks/sp_geometric.py

@@ -1,4 +1,5 @@
 """Cryo SP geometric task."""
+
 import math
 
 import numpy as np
@@ -19,9 +20,9 @@ from dkist_processing_cryonirsp.parsers.cryonirsp_l0_fits_access import (
     CryonirspLinearizedFitsAccess,
 )
 from dkist_processing_cryonirsp.tasks.cryonirsp_base import CryonirspTaskBase
-from dkist_processing_cryonirsp.tasks.mixin.shift_measurements import ShiftMeasurementsMixin
 from dkist_processing_cryonirsp.tasks.mixin.shift_measurements import SPATIAL
 from dkist_processing_cryonirsp.tasks.mixin.shift_measurements import SPECTRAL
+from dkist_processing_cryonirsp.tasks.mixin.shift_measurements import ShiftMeasurementsMixin
 
 __all__ = ["SPGeometricCalibration"]
 

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/tasks/sp_science.py

@@ -1,4 +1,5 @@
 """Cryo SP science calibration task."""
+
 from collections import defaultdict
 
 import numpy as np

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/tasks/sp_solar_gain.py

@@ -1,4 +1,5 @@
 """Cryo SP solar gain task."""
+
 import numpy as np
 import scipy.ndimage as spnd
 from dkist_processing_common.codecs.fits import fits_array_encoder

{dkist_processing_cryonirsp-1.12.1rc3 → dkist_processing_cryonirsp-1.12.3}/dkist_processing_cryonirsp/tasks/sp_wavelength_calibration.py

@@ -1,4 +1,5 @@
 """Cryo SP wavelength calibration task. See :doc:`this page </wavelength_calibration>` for more information."""
+
 import math
 
 import astropy.units as u
@@ -16,8 +17,8 @@ from solar_wavelength_calibration.fitter.parameters import DispersionBoundRange
 from solar_wavelength_calibration.fitter.parameters import LengthBoundRange
 from solar_wavelength_calibration.fitter.parameters import UnitlessBoundRange
 from solar_wavelength_calibration.fitter.parameters import WavelengthCalibrationParameters
-from solar_wavelength_calibration.fitter.wavelength_fitter import calculate_initial_crval_guess
 from solar_wavelength_calibration.fitter.wavelength_fitter import WavelengthParameters
+from solar_wavelength_calibration.fitter.wavelength_fitter import calculate_initial_crval_guess
 from sunpy.coordinates import HeliocentricInertial
 
 from dkist_processing_cryonirsp.codecs.fits import cryo_fits_array_decoder