diffpy.apps 0.2.0rc2__tar.gz → 0.2.0rc3__tar.gz

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Files changed (51) hide show
  1. {diffpy_apps-0.2.0rc2/src/diffpy.apps.egg-info → diffpy_apps-0.2.0rc3}/PKG-INFO +1 -1
  2. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/requirements/tests.txt +1 -0
  3. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/src/diffpy/apps/app_agentify.py +4 -0
  4. {diffpy_apps-0.2.0rc2/src/diffpy/apps/refinebase → diffpy_apps-0.2.0rc3/src/diffpy/apps/parametric_refinement}/parametric_model.py +300 -206
  5. {diffpy_apps-0.2.0rc2/src/diffpy/apps/refinebase → diffpy_apps-0.2.0rc3/src/diffpy/apps/parametric_refinement}/refinement_server.py +85 -13
  6. {diffpy_apps-0.2.0rc2/src/diffpy/apps/refinebase → diffpy_apps-0.2.0rc3/src/diffpy/apps/parametric_refinement}/refinement_session.py +160 -47
  7. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3/src/diffpy.apps.egg-info}/PKG-INFO +1 -1
  8. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/src/diffpy.apps.egg-info/SOURCES.txt +4 -4
  9. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/tests/conftest.py +26 -1
  10. diffpy_apps-0.2.0rc3/tests/test_agentify.py +103 -0
  11. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/tests/test_parametric_model.py +4 -2
  12. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/tests/test_refinement_server.py +29 -13
  13. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/tests/test_refinement_session.py +18 -7
  14. diffpy_apps-0.2.0rc2/tests/test_agentify.py +0 -119
  15. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/AUTHORS.rst +0 -0
  16. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/LICENSE.rst +0 -0
  17. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/MANIFEST.in +0 -0
  18. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/README.rst +0 -0
  19. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/pyproject.toml +0 -0
  20. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/requirements/build.txt +0 -0
  21. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/requirements/conda.txt +0 -0
  22. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/requirements/docs.txt +0 -0
  23. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/requirements/pip.txt +0 -0
  24. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/setup.cfg +0 -0
  25. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/src/diffpy/__init__.py +0 -0
  26. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/src/diffpy/apps/__init__.py +0 -0
  27. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/src/diffpy/apps/app_runmacro.py +0 -0
  28. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/src/diffpy/apps/apps.py +0 -0
  29. {diffpy_apps-0.2.0rc2/src/diffpy/apps/refinebase → diffpy_apps-0.2.0rc3/src/diffpy/apps/parametric_refinement}/__init__.py +0 -0
  30. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/src/diffpy/apps/pdfadapter.py +0 -0
  31. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/src/diffpy/apps/version.py +0 -0
  32. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/src/diffpy.apps.egg-info/dependency_links.txt +0 -0
  33. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/src/diffpy.apps.egg-info/entry_points.txt +0 -0
  34. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/src/diffpy.apps.egg-info/requires.txt +0 -0
  35. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/src/diffpy.apps.egg-info/top_level.txt +0 -0
  36. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/tests/data/C60.gr +0 -0
  37. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/tests/data/Ni.cif +0 -0
  38. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/tests/data/Ni.gr +0 -0
  39. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/tests/data/c60xyz.txt +0 -0
  40. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/tests/data/make_c60.txt +0 -0
  41. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/tests/data/ni-q27r100-neutron.gr +0 -0
  42. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/tests/data/ni-q27r60-xray.gr +0 -0
  43. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/tests/data/pb.cif +0 -0
  44. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/tests/data/pb_100_qmin1.gr +0 -0
  45. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/tests/data/si-q27r60-xray.gr +0 -0
  46. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/tests/data/si.cif +0 -0
  47. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/tests/data/si90ni10-q27r60-xray.gr +0 -0
  48. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/tests/data/sine.dat +0 -0
  49. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/tests/helper.py +0 -0
  50. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/tests/test_pdfadapter.py +0 -0
  51. {diffpy_apps-0.2.0rc2 → diffpy_apps-0.2.0rc3}/tests/test_runmacro.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: diffpy.apps
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- Version: 0.2.0rc2
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+ Version: 0.2.0rc3
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  Summary: User applications to help with tasks using diffpy packages
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  Author-email: Yuchen Xiao <xiaoyuch@msu.edu>, Simon Billinge <sbillinge@ucsb.edu>
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  Maintainer-email: Simon Billinge <sbillinge@ucsb.edu>
@@ -4,3 +4,4 @@ codecov
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  coverage
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  pytest-cov
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  pytest-env
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+ pytest-mock
@@ -1,3 +1,4 @@
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+ import json
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  import shutil
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  import socket
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  import subprocess
@@ -44,9 +45,12 @@ def agentify(args):
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  ["git", "clone", REPO_URL, str(tmp_path)],
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  check=True,
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  )
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+ skills = json.load(open(tmp_path / "skills.json"))
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  for item in tmp_path.iterdir():
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  if item.is_dir():
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  destination = dest_dir / item.name
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+ if item.name not in skills:
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+ continue
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  if destination.exists():
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  if args.update:
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  shutil.rmtree(destination)