diffbio 0.1.8__tar.gz → 0.1.9__tar.gz

{diffbio-0.1.8 → diffbio-0.1.9}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.5
 Name: diffbio
-Version: 0.1.8
+Version: 0.1.9
 Summary: End-to-end differentiable bioinformatics for JAX/Flax NNX: alignment, mapping, assembly, variant calling, RNA-seq, single-cell, epigenomics, CRISPR, metabolomics, multi-omics, protein and RNA structure, molecular dynamics and drug-discovery operators composed into trainable pipelines on datarax, artifex, opifex and calibrax
 Project-URL: Bug Tracker, https://github.com/avitai/DiffBio/issues
 Project-URL: Documentation, https://diffbio.readthedocs.io
@@ -50,7 +50,7 @@ Requires-Dist: beartype>=0.14.1
 Requires-Dist: biopython>=1.81
 Requires-Dist: calibrax>=0.1.8
 Requires-Dist: chex>=0.1.7
-Requires-Dist: datarax>=0.1.11
+Requires-Dist: datarax>=0.1.13
 Requires-Dist: flax>=0.12.9
 Requires-Dist: h5py>=3.7
 Requires-Dist: jax-md>=0.2.27
@@ -60,7 +60,7 @@ Requires-Dist: numpy>=1.24
 Requires-Dist: opifex>=0.2.7
 Requires-Dist: optax>=0.2.8
 Requires-Dist: scipy>=1.10
-Requires-Dist: substrax>=0.1.9
+Requires-Dist: substrax>=0.1.11
 Provides-Extra: all
 Requires-Dist: bandit[toml]>=1.8.6; extra == 'all'
 Requires-Dist: beartype>=0.14.1; extra == 'all'

{diffbio-0.1.8 → diffbio-0.1.9}/pyproject.toml

@@ -37,7 +37,7 @@ classifiers = [
 ]
 dependencies = [
   # Datarax - operator, source, and pipeline contracts
-  "datarax>=0.1.11",
+  "datarax>=0.1.13",
   # Artifex - modeling, modality, and transformer substrate
   "avitai-artifex>=0.1.10",
   # Opifex - scientific ML, operator learning, and advanced optimization
@@ -46,7 +46,7 @@ dependencies = [
   "calibrax>=0.1.8",
   # Substrax - device identity, meshes, runtime settings and checkpoint store shared by the
   # siblings; 0.1.6 adds substrax.runtime, substrax.artifacts and substrax.testing.
-  "substrax>=0.1.9",
+  "substrax>=0.1.11",
   # JAX ecosystem
   "beartype>=0.14.1",
   "chex>=0.1.7",
@@ -71,7 +71,7 @@ license = {file = "LICENSE"}
 name = "diffbio"
 readme = "README.md"
 requires-python = ">=3.12,<3.14"
-version = "0.1.8"
+version = "0.1.9"
 
 [project.optional-dependencies]
 all = ["diffbio[benchmark,chem,cuda12,dev,docs,genomics,metal,soft-ops-advanced,soft-ops-ot,test,torch-io]"]