descriptron-core 2.3.0__tar.gz → 2.5.2__tar.gz

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  1. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/PKG-INFO +1 -1
  2. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/pyproject.toml +1 -1
  3. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/.gitignore +0 -0
  4. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/LICENSE +0 -0
  5. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/NOTICE +0 -0
  6. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/README.md +0 -0
  7. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/__init__.py +0 -0
  8. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/cli.py +0 -0
  9. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/data/biorag_prompts/biorag_system_prompts_v1.txt +0 -0
  10. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/data/biorag_prompts/biorag_system_prompts_v2.txt +0 -0
  11. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/data/biorag_prompts/diaphorina_user_prompts.txt +0 -0
  12. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/data/biorag_prompts/ontologies/aism.obo +0 -0
  13. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/data/biorag_prompts/ontologies/pato.obo +0 -0
  14. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/data/biorag_prompts/schemas/sdd_1.1/SDD.xsd +0 -0
  15. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/data/biorag_prompts/schemas/sdd_1.1/SDD_EnumLib.xsd +0 -0
  16. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/data/biorag_prompts/schemas/sdd_1.1/SDD_TypeLib.xsd +0 -0
  17. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/data/biorag_prompts/schemas/sdd_1.1/UBIF_BasePattern.xsd +0 -0
  18. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/data/biorag_prompts/schemas/sdd_1.1/UBIF_CoreExtensions.xsd +0 -0
  19. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/data/biorag_prompts/schemas/sdd_1.1/UBIF_CoreOntology.xsd +0 -0
  20. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/data/biorag_prompts/schemas/sdd_1.1/UBIF_EnumLib.xsd +0 -0
  21. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/data/biorag_prompts/schemas/sdd_1.1/UBIF_LinneanCore.xsd +0 -0
  22. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/data/biorag_prompts/schemas/sdd_1.1/UBIF_TypeLib.xsd +0 -0
  23. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/data/biorag_prompts/schemas/sdd_1.1/w3c-schemata/xml.xsd +0 -0
  24. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/data/biorag_prompts/schemas/taxpub/sample_treatment_deposit_example.xml +0 -0
  25. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/data/biorag_prompts/schemas/taxpub/sample_zookeys_26056_tp.xml +0 -0
  26. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/data/biorag_prompts/schemas/taxpub/tax-treatment-NS0-v1_flat.dtd +0 -0
  27. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/data/biorag_prompts/taxon_profiles/TEMPLATE_taxon_profile.yaml +0 -0
  28. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/data/biorag_prompts/taxon_profiles/diaphorina_taxon_profile.yaml +0 -0
  29. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/FHS_and_CLAHE_V21.py +0 -0
  30. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_add_discrete_characters_v1.py +0 -0
  31. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_annotation_reorient_v1.py +0 -0
  32. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_annotation_screen_v1.py +0 -0
  33. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_autapomorphy_v1.py +0 -0
  34. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_calibrate_v1.py +0 -0
  35. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_calibration_figures_v1.py +0 -0
  36. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_character_gate_v1.py +0 -0
  37. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_character_reliability_v1.py +0 -0
  38. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_character_robustness_v1.py +0 -0
  39. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_collaborator_forms_v1.py +0 -0
  40. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_computed_sets_v1.py +0 -0
  41. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_confabulation_checker_v2.py +0 -0
  42. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_congruence_compare_v1.py +0 -0
  43. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_description_refiner_v1.py +0 -0
  44. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_descriptive_scoring_v1.py +0 -0
  45. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_feature_policy.py +0 -0
  46. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_frame_orientation_calibrate_v1.py +0 -0
  47. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_frame_orientation_v1.py +0 -0
  48. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_gate_compare_v1.py +0 -0
  49. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_graph_identify_v1.py +0 -0
  50. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_graph_support_figure_v1.py +0 -0
  51. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_homology_frame_v1.py +0 -0
  52. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_instrument_compare_v3.py +0 -0
  53. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_key_builder_v1.py +0 -0
  54. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_key_feature_filter_v2.py +0 -0
  55. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_key_fuzzy_figures_v1.py +0 -0
  56. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_key_fuzzy_v1.py +0 -0
  57. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_key_holdout_v1.py +0 -0
  58. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_key_jackknife_support_v1.py +0 -0
  59. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_label_conflict_check_v1.py +0 -0
  60. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_llm_backend.py +0 -0
  61. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_make_taxon_profile_v1.py +0 -0
  62. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_methods_summary_figure_v1.py +0 -0
  63. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_novelty_score_v1.py +0 -0
  64. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_ontology_annotator_v2.py +0 -0
  65. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_outgroup_batch_check_v1.py +0 -0
  66. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_outline_shape_v1.py +0 -0
  67. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_prompts/biorag_system_prompts_v1.txt +0 -0
  68. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_prompts/biorag_system_prompts_v2.txt +0 -0
  69. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_prompts/diaphorina_user_prompts.txt +0 -0
  70. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_prompts/ontologies/aism.obo +0 -0
  71. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_prompts/ontologies/pato.obo +0 -0
  72. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_prompts/schemas/sdd_1.1/SDD.xsd +0 -0
  73. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_prompts/schemas/sdd_1.1/SDD_EnumLib.xsd +0 -0
  74. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_prompts/schemas/sdd_1.1/SDD_TypeLib.xsd +0 -0
  75. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_prompts/schemas/sdd_1.1/UBIF_BasePattern.xsd +0 -0
  76. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_prompts/schemas/sdd_1.1/UBIF_CoreExtensions.xsd +0 -0
  77. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_prompts/schemas/sdd_1.1/UBIF_CoreOntology.xsd +0 -0
  78. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_prompts/schemas/sdd_1.1/UBIF_EnumLib.xsd +0 -0
  79. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_prompts/schemas/sdd_1.1/UBIF_LinneanCore.xsd +0 -0
  80. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_prompts/schemas/sdd_1.1/UBIF_TypeLib.xsd +0 -0
  81. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_prompts/schemas/sdd_1.1/w3c-schemata/xml.xsd +0 -0
  82. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_prompts/schemas/taxpub/sample_treatment_deposit_example.xml +0 -0
  83. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_prompts/schemas/taxpub/sample_zookeys_26056_tp.xml +0 -0
  84. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_prompts/schemas/taxpub/tax-treatment-NS0-v1_flat.dtd +0 -0
  85. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_prompts/taxon_profiles/TEMPLATE_taxon_profile.yaml +0 -0
  86. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_prompts/taxon_profiles/diaphorina_taxon_profile.yaml +0 -0
  87. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_provenance_v1.py +0 -0
  88. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_rebuild_downstream_v1.sh +0 -0
  89. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_reliability_figures_v1.py +0 -0
  90. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_rename_species_v1.py +0 -0
  91. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_rerun_descriptive_tables_v1.sh +0 -0
  92. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_retest_compare_v1.py +0 -0
  93. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_specimen_id.py +0 -0
  94. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_subjective_checks_v1.py +0 -0
  95. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_type_material_v1.py +0 -0
  96. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_vlm_characters_v1.py +0 -0
  97. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_vlm_heatmap_figures_v1.py +0 -0
  98. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_vlm_reliability_figure_v1.py +0 -0
  99. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biorag_vlm_roi_figures_v1.py +0 -0
  100. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biosyslit_rag_retrieval.py +0 -0
  101. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/biosyslit_rag_retrieval_v2.py +0 -0
  102. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/build_monograph_exports_v1.py +0 -0
  103. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/build_species_treatment_docx_v2.py +0 -0
  104. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/coco_combiner_V13.py +0 -0
  105. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/coco_converter_v24.py +0 -0
  106. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/color_extraction_with_names-v8.py +0 -0
  107. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/color_phenomics_homology_v2_1.py +0 -0
  108. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/compile_specimen_data.py +0 -0
  109. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/descriptron_centerline.py +0 -0
  110. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/descriptron_coco_tools.py +0 -0
  111. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/descriptron_convert.py +0 -0
  112. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/descriptron_credentials.py +0 -0
  113. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/descriptron_joints.py +0 -0
  114. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/descriptron_metadata.py +0 -0
  115. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/descriptron_phylo.py +0 -0
  116. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/descriptron_rosetta.py +0 -0
  117. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/descriptron_shape_stats.py +0 -0
  118. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/descriptron_trait_stats.py +0 -0
  119. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/landmark_gpa_V1.py +0 -0
  120. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/landmark_gpa_V2.py +0 -0
  121. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/make_reproducibility_bundle.py +0 -0
  122. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/run_full_pipeline_v2.py +0 -0
  123. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/semi_landmark_and_kpts_procrustesV34_GPA.py +0 -0
  124. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/semi_landmark_and_kpts_procrustesV42_GPA.py +0 -0
  125. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/texture_phenomics_from_coco.py +0 -0
  126. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/texture_phenomics_homology.py +0 -0
  127. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/validate_centerline_lengths.py +0 -0
  128. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/validate_phylo_published_waldron2025.py +0 -0
  129. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/validate_phylo_real_tree.py +0 -0
  130. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/validate_phylo_traits.py +0 -0
  131. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/validate_pipeline_gm_vs_geomorph.py +0 -0
  132. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/validate_semilandmarks_vs_geomorph.py +0 -0
  133. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/validate_shape_stats_vs_geomorph.py +0 -0
  134. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/validate_shape_stats_vs_rrpp.py +0 -0
  135. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/validate_texture_glcm.py +0 -0
  136. {descriptron_core-2.3.0 → descriptron_core-2.5.2}/src/descriptron_core/tools/validate_trait_stats.py +0 -0
{descriptron_core-2.3.0 → descriptron_core-2.5.2}/PKG-INFO RENAMED
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  Metadata-Version: 2.5
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  Name: descriptron-core
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- Version: 2.3.0
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+ Version: 2.5.2
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  Summary: Evidence-tiered species descriptions, keys and audits from phenomic matrices
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  Project-URL: Homepage, https://github.com/alexrvandam/Descriptron
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  Project-URL: Repository, https://github.com/alexrvandam/Descriptron
{descriptron_core-2.3.0 → descriptron_core-2.5.2}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
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  [project]
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  name = "descriptron-core"
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- version = "2.3.0"
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+ version = "2.5.2"
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  description = "Evidence-tiered species descriptions, keys and audits from phenomic matrices"
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  readme = "README.md"
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  requires-python = ">=3.9"