descriptron-core 2.0.1__tar.gz → 2.0.2__tar.gz

{descriptron_core-2.0.1 → descriptron_core-2.0.2}/NOTICE

@@ -14,9 +14,12 @@ Anyone who uses Descriptron, or any software derived from it (including
 descriptron-core, descriptron-vision, descriptron-gui and descriptron-mcp), in
 work that is published, presented or distributed must cite:
 
-  1. The software (Descriptron v2):
-     Van Dam, A. R. Descriptron (version used). GitHub repository.
-     https://github.com/alexrvandam/Descriptron
+  1. The software (Descriptron v2), by the DOI of the version used:
+     Van Dam, A. R. (2026). Descriptron: morphology-driven species descriptions,
+     keys and delimitation for dark taxa (Version 2.0.1). Zenodo.
+     https://doi.org/10.5281/zenodo.22918056
+     (all versions: https://doi.org/10.5281/zenodo.17077224;
+      repository: https://github.com/alexrvandam/Descriptron)
 
   2. The first Descriptron paper:
      Van Dam, A. R. & Štarhová Serbina, L. (2026). Descriptron: Artificial
@@ -29,11 +32,15 @@ work that is published, presented or distributed must cite:
 
 BibTeX:
 
-@misc{vandam_descriptron_software,
-  author       = {Van Dam, Alex R.},
-  title        = {Descriptron},
-  howpublished = {GitHub repository},
-  url          = {https://github.com/alexrvandam/Descriptron}
+@software{vandam_2026_descriptron_v201,
+  author    = {Van Dam, Alex R.},
+  title     = {Descriptron: morphology-driven species descriptions, keys and
+               delimitation for dark taxa},
+  version   = {v2.0.1},
+  year      = {2026},
+  publisher = {Zenodo},
+  doi       = {10.5281/zenodo.22918056},
+  url       = {https://doi.org/10.5281/zenodo.22918056}
 }
 
 @article{vandam2026descriptron,

{descriptron_core-2.0.1 → descriptron_core-2.0.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.5
 Name: descriptron-core
-Version: 2.0.1
+Version: 2.0.2
 Summary: Evidence-tiered species descriptions, keys and audits from phenomic matrices
 Project-URL: Homepage, https://github.com/alexrvandam/Descriptron
 Project-URL: Repository, https://github.com/alexrvandam/Descriptron

{descriptron_core-2.0.1 → descriptron_core-2.0.2}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "descriptron-core"
-version = "2.0.1"
+version = "2.0.2"
 description = "Evidence-tiered species descriptions, keys and audits from phenomic matrices"
 readme = "README.md"
 requires-python = ">=3.9"

{descriptron_core-2.0.1 → descriptron_core-2.0.2}/src/descriptron_core/tools/biorag_key_feature_filter_v2.py

@@ -216,6 +216,7 @@ def drop_flagged(df: pd.DataFrame, flags: pd.DataFrame, report: dict,
     """Remove flagged image x structure rows; remove the whole image when
     >= whole_image_min of its structures are flagged (wrong-scale signature)."""
     if flags is None or not len(flags):
+        report["flagged_rows_removed"] = {"whole_images": [], "rows_removed": 0}
         return df
     per_img = flags.groupby("image_base")["category"].nunique()
     bad_imgs = set(per_img[per_img >= whole_image_min].index)