deriva-ml 1.17.7__tar.gz → 1.17.9__tar.gz

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Files changed (114) hide show
  1. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/PKG-INFO +1 -1
  2. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/dataset/upload.py +0 -1
  3. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/execution/execution.py +4 -1
  4. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml.egg-info/PKG-INFO +1 -1
  5. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/.github/release-drafter.yml +0 -0
  6. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/.github/workflows/publish-docs.yml +0 -0
  7. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/.github/workflows/release.yml +0 -0
  8. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/.gitignore +0 -0
  9. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/LICENSE +0 -0
  10. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/README.md +0 -0
  11. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/.DS_Store +0 -0
  12. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/Notebooks/DerivaML Create Notes.ipynb +0 -0
  13. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/Notebooks/DerivaML Dataset.ipynb +0 -0
  14. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/Notebooks/DerivaML Execution.ipynb +0 -0
  15. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/Notebooks/DerivaML Features.ipynb +0 -0
  16. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/Notebooks/DerivaML Ingest.ipynb +0 -0
  17. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/Notebooks/DerivaML Vocabulary.ipynb +0 -0
  18. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/assets/ERD.png +0 -0
  19. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/assets/Launcher.png +0 -0
  20. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/assets/copy_minid.png +0 -0
  21. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/assets/deriva-logo.png +0 -0
  22. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/assets/deriva-ml.pdf +0 -0
  23. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/assets/sharing-at-home.pdf +0 -0
  24. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/code-docs/dataset.md +0 -0
  25. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/code-docs/dataset_aux_classes.md +0 -0
  26. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/code-docs/dataset_bag.md +0 -0
  27. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/code-docs/deriva_definitions.md +0 -0
  28. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/code-docs/deriva_ml_base.md +0 -0
  29. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/code-docs/deriva_model.md +0 -0
  30. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/code-docs/execution.md +0 -0
  31. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/code-docs/execution_configuration.md +0 -0
  32. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/code-docs/feature.md +0 -0
  33. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/code-docs/upload.md +0 -0
  34. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/index.md +0 -0
  35. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/release-notes.md +0 -0
  36. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/user-guide/datasets.md +0 -0
  37. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/user-guide/deriva_ml_structure.md +0 -0
  38. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/user-guide/execution-configuration.md +0 -0
  39. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/user-guide/file-assets.md +0 -0
  40. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/user-guide/identifiers.md +0 -0
  41. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/user-guide/install.md +0 -0
  42. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/user-guide/notebooks.md +0 -0
  43. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/docs/user-guide/overview.md +0 -0
  44. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/mkdocs.yml +0 -0
  45. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/pyproject.toml +0 -0
  46. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/setup.cfg +0 -0
  47. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/.DS_Store +0 -0
  48. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/.DS_Store +0 -0
  49. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/__init__.py +0 -0
  50. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/bump_version.py +0 -0
  51. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/core/__init__.py +0 -0
  52. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/core/base.py +0 -0
  53. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/core/config.py +0 -0
  54. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/core/constants.py +0 -0
  55. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/core/definitions.py +0 -0
  56. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/core/enums.py +0 -0
  57. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/core/ermrest.py +0 -0
  58. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/core/exceptions.py +0 -0
  59. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/core/filespec.py +0 -0
  60. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/dataset/__init__.py +0 -0
  61. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/dataset/aux_classes.py +0 -0
  62. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/dataset/dataset.py +0 -0
  63. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/dataset/dataset_bag.py +0 -0
  64. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/dataset/history.py +0 -0
  65. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/demo_catalog.py +0 -0
  66. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/execution/__init__.py +0 -0
  67. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/execution/environment.py +0 -0
  68. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/execution/execution_configuration.py +0 -0
  69. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/execution/workflow.py +0 -0
  70. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/feature.py +0 -0
  71. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/install_kernel.py +0 -0
  72. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/model/__init__.py +0 -0
  73. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/model/catalog.py +0 -0
  74. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/model/database.py +0 -0
  75. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/protocols/dataset.py +0 -0
  76. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/run_notebook.py +0 -0
  77. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/schema/__init__.py +0 -0
  78. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/schema/annotations.py +0 -0
  79. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/schema/check_schema.py +0 -0
  80. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/schema/create_schema.py +0 -0
  81. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/schema/deriva-ml-reference.json +0 -0
  82. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/schema/policy.json +0 -0
  83. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/schema/table_comments_utils.py +0 -0
  84. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/test.py +0 -0
  85. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml.egg-info/SOURCES.txt +0 -0
  86. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml.egg-info/dependency_links.txt +0 -0
  87. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml.egg-info/entry_points.txt +0 -0
  88. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml.egg-info/requires.txt +0 -0
  89. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml.egg-info/top_level.txt +0 -0
  90. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/tests/__init__.py +0 -0
  91. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/tests/conftest.py +0 -0
  92. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/tests/core/__init__.py +0 -0
  93. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/tests/core/test_basic_tables.py +0 -0
  94. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/tests/core/test_file.py +0 -0
  95. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/tests/core/test_vocabulary.py +0 -0
  96. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/tests/dataset/__init__.py +0 -0
  97. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/tests/dataset/demo-catalog-schema.json +0 -0
  98. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/tests/dataset/deriva-ml-reference.json +0 -0
  99. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/tests/dataset/eye-ai-catalog-schema.json +0 -0
  100. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/tests/dataset/test_dataset_version.py +0 -0
  101. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/tests/dataset/test_datasets.py +0 -0
  102. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/tests/dataset/test_download.py +0 -0
  103. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/tests/execution/__init__.py +0 -0
  104. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/tests/execution/test_execution.py +0 -0
  105. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/tests/execution/workflow-test.ipynb +0 -0
  106. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/tests/execution/workflow-test.py +0 -0
  107. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/tests/feature/test_features.py +0 -0
  108. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/tests/model/__init__.py +0 -0
  109. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/tests/model/test_database.py +0 -0
  110. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/tests/model/test_models.py +0 -0
  111. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/tests/test-files/execution-parameters.json +0 -0
  112. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/tests/test-files/notebook-parameters.json +0 -0
  113. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/tests/test_utils.py +0 -0
  114. {deriva_ml-1.17.7 → deriva_ml-1.17.9}/uv.lock +0 -0
{deriva_ml-1.17.7 → deriva_ml-1.17.9}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: deriva-ml
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- Version: 1.17.7
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+ Version: 1.17.9
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  Summary: Utilities to simplify use of Dervia and Pandas to create reproducable ML pipelines
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  Author-email: ISRD <isrd-dev@isi.edu>
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  Requires-Python: >=3.10
{deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/dataset/upload.py RENAMED
@@ -295,7 +295,6 @@ def upload_directory(model: DerivaModel, directory: Path | str) -> dict[Any, Fil
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  # Now upload the files by creating an upload spec and then calling the uploader.
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  with TemporaryDirectory() as temp_dir:
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  spec_file = Path(temp_dir) / "config.json"
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-
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  with spec_file.open("w+") as cfile:
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  json.dump(bulk_upload_configuration(model), cfile)
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  uploader = GenericUploader(
{deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml/execution/execution.py RENAMED
@@ -920,8 +920,11 @@ class Execution:
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  # Determine if we will need to rename an existing file as the asset.
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  file_name = Path(file_name)
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- target_name = Path(rename_file) if file_name.exists() and rename_file else file_name
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+ if file_name.name == "_implementations.log":
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+ # There is a funny bug with S3 hatrac if we have the leading _ in the filename.
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+ file_name = file_name.with_name("-implementations.log")
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+ target_name = Path(rename_file) if file_name.exists() and rename_file else file_name
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  asset_path = asset_file_path(
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  prefix=self._working_dir,
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  exec_rid=self.execution_rid,
{deriva_ml-1.17.7 → deriva_ml-1.17.9}/src/deriva_ml.egg-info/PKG-INFO RENAMED
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  Metadata-Version: 2.4
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  Name: deriva-ml
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- Version: 1.17.7
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+ Version: 1.17.9
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  Summary: Utilities to simplify use of Dervia and Pandas to create reproducable ML pipelines
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  Author-email: ISRD <isrd-dev@isi.edu>
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  Requires-Python: >=3.10
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