deriva-ml 1.17.12__tar.gz → 1.17.13__tar.gz

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Files changed (179) hide show
  1. {deriva_ml-1.17.12/src/deriva_ml.egg-info → deriva_ml-1.17.13}/PKG-INFO +1 -1
  2. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/catalog/__init__.py +2 -0
  3. {deriva_ml-1.17.12 → deriva_ml-1.17.13/src/deriva_ml.egg-info}/PKG-INFO +1 -1
  4. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/.DS_Store +0 -0
  5. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/.cursor.config +0 -0
  6. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/.github/release-drafter.yml +0 -0
  7. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/.github/workflows/publish-docs.yml +0 -0
  8. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/.github/workflows/release.yml +0 -0
  9. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/.gitignore +0 -0
  10. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/.vscode/settings.json +0 -0
  11. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/CLAUDE.md +0 -0
  12. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/LICENSE +0 -0
  13. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/README.md +0 -0
  14. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/.DS_Store +0 -0
  15. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/Notebooks/DerivaML Create Notes.ipynb +0 -0
  16. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/Notebooks/DerivaML Dataset.ipynb +0 -0
  17. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/Notebooks/DerivaML Execution.ipynb +0 -0
  18. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/Notebooks/DerivaML Features.ipynb +0 -0
  19. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/Notebooks/DerivaML Ingest.ipynb +0 -0
  20. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/Notebooks/DerivaML Vocabulary.ipynb +0 -0
  21. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/architecture.md +0 -0
  22. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/assets/ERD.png +0 -0
  23. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/assets/Launcher.png +0 -0
  24. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/assets/copy_minid.png +0 -0
  25. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/assets/deriva-logo.png +0 -0
  26. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/assets/deriva-ml.pdf +0 -0
  27. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/assets/sharing-at-home.pdf +0 -0
  28. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/code-docs/dataset.md +0 -0
  29. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/code-docs/dataset_aux_classes.md +0 -0
  30. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/code-docs/dataset_bag.md +0 -0
  31. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/code-docs/deriva_definitions.md +0 -0
  32. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/code-docs/deriva_ml_base.md +0 -0
  33. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/code-docs/deriva_model.md +0 -0
  34. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/code-docs/exceptions.md +0 -0
  35. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/code-docs/execution.md +0 -0
  36. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/code-docs/execution_configuration.md +0 -0
  37. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/code-docs/feature.md +0 -0
  38. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/code-docs/upload.md +0 -0
  39. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/code-docs/workflow.md +0 -0
  40. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/index.md +0 -0
  41. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/release-notes.md +0 -0
  42. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/user-guide/annotations.md +0 -0
  43. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/user-guide/datasets.md +0 -0
  44. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/user-guide/deriva_ml_structure.md +0 -0
  45. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/user-guide/execution-configuration.md +0 -0
  46. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/user-guide/features.md +0 -0
  47. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/user-guide/file-assets.md +0 -0
  48. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/user-guide/hydra-zen-configuration.md +0 -0
  49. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/user-guide/identifiers.md +0 -0
  50. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/user-guide/install.md +0 -0
  51. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/user-guide/notebooks.md +0 -0
  52. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/docs/user-guide/overview.md +0 -0
  53. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/mkdocs.yml +0 -0
  54. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/pyproject.toml +0 -0
  55. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/setup.cfg +0 -0
  56. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/.DS_Store +0 -0
  57. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/.DS_Store +0 -0
  58. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/__init__.py +0 -0
  59. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/asset/__init__.py +0 -0
  60. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/asset/asset.py +0 -0
  61. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/asset/aux_classes.py +0 -0
  62. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/bump_version.py +0 -0
  63. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/catalog/clone.py +0 -0
  64. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/catalog/localize.py +0 -0
  65. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/core/__init__.py +0 -0
  66. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/core/base.py +0 -0
  67. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/core/config.py +0 -0
  68. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/core/constants.py +0 -0
  69. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/core/definitions.py +0 -0
  70. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/core/enums.py +0 -0
  71. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/core/ermrest.py +0 -0
  72. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/core/exceptions.py +0 -0
  73. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/core/filespec.py +0 -0
  74. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/core/logging_config.py +0 -0
  75. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/core/mixins/__init__.py +0 -0
  76. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/core/mixins/annotation.py +0 -0
  77. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/core/mixins/asset.py +0 -0
  78. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/core/mixins/dataset.py +0 -0
  79. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/core/mixins/execution.py +0 -0
  80. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/core/mixins/feature.py +0 -0
  81. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/core/mixins/file.py +0 -0
  82. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/core/mixins/path_builder.py +0 -0
  83. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/core/mixins/rid_resolution.py +0 -0
  84. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/core/mixins/vocabulary.py +0 -0
  85. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/core/mixins/workflow.py +0 -0
  86. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/core/validation.py +0 -0
  87. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/dataset/__init__.py +0 -0
  88. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/dataset/aux_classes.py +0 -0
  89. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/dataset/catalog_graph.py +0 -0
  90. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/dataset/dataset.py +0 -0
  91. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/dataset/dataset_bag.py +0 -0
  92. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/dataset/history.py +0 -0
  93. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/dataset/upload.py +0 -0
  94. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/demo_catalog.py +0 -0
  95. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/execution/__init__.py +0 -0
  96. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/execution/base_config.py +0 -0
  97. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/execution/environment.py +0 -0
  98. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/execution/execution.py +0 -0
  99. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/execution/execution_configuration.py +0 -0
  100. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/execution/execution_record.py +0 -0
  101. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/execution/find_caller.py +0 -0
  102. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/execution/model_protocol.py +0 -0
  103. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/execution/multirun_config.py +0 -0
  104. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/execution/runner.py +0 -0
  105. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/execution/workflow.py +0 -0
  106. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/experiment/__init__.py +0 -0
  107. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/experiment/experiment.py +0 -0
  108. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/feature.py +0 -0
  109. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/install_kernel.py +0 -0
  110. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/interfaces.py +0 -0
  111. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/model/__init__.py +0 -0
  112. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/model/annotations.py +0 -0
  113. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/model/catalog.py +0 -0
  114. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/model/database.py +0 -0
  115. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/model/deriva_ml_database.py +0 -0
  116. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/model/handles.py +0 -0
  117. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/run_model.py +0 -0
  118. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/run_notebook.py +0 -0
  119. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/schema/__init__.py +0 -0
  120. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/schema/annotations.py +0 -0
  121. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/schema/check_schema.py +0 -0
  122. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/schema/create_schema.py +0 -0
  123. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/schema/deriva-ml-reference.json +0 -0
  124. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/schema/policy.json +0 -0
  125. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/schema/table_comments_utils.py +0 -0
  126. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/schema/validation.py +0 -0
  127. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml.egg-info/SOURCES.txt +0 -0
  128. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml.egg-info/dependency_links.txt +0 -0
  129. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml.egg-info/entry_points.txt +0 -0
  130. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml.egg-info/requires.txt +0 -0
  131. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml.egg-info/top_level.txt +0 -0
  132. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/test_output.txt +0 -0
  133. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/__init__.py +0 -0
  134. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/asset/__init__.py +0 -0
  135. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/asset/test_asset.py +0 -0
  136. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/catalog/__init__.py +0 -0
  137. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/catalog/test_clone_catalog.py +0 -0
  138. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/catalog_manager.py +0 -0
  139. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/conftest.py +0 -0
  140. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/core/__init__.py +0 -0
  141. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/core/test_basic_tables.py +0 -0
  142. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/core/test_catalog_annotations.py +0 -0
  143. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/core/test_file.py +0 -0
  144. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/core/test_hydra_zen_config.py +0 -0
  145. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/core/test_rid_resolution.py +0 -0
  146. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/core/test_vocabulary.py +0 -0
  147. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/dataset/__init__.py +0 -0
  148. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/dataset/demo-catalog-schema.json +0 -0
  149. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/dataset/deriva-ml-reference.json +0 -0
  150. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/dataset/eye-ai-catalog-schema.json +0 -0
  151. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/dataset/test_catalog_dataset_functions.py +0 -0
  152. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/dataset/test_dataset_version.py +0 -0
  153. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/dataset/test_datasets.py +0 -0
  154. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/dataset/test_denormalize.py +0 -0
  155. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/dataset/test_download.py +0 -0
  156. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/dataset/test_restructure.py +0 -0
  157. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/execution/__init__.py +0 -0
  158. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/execution/test_execution.py +0 -0
  159. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/execution/test_find_caller.py +0 -0
  160. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/execution/test_runner.py +0 -0
  161. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/execution/test_storage.py +0 -0
  162. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/execution/workflow-test.ipynb +0 -0
  163. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/execution/workflow-test.py +0 -0
  164. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/experiment/__init__.py +0 -0
  165. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/experiment/test_experiment.py +0 -0
  166. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/factories.py +0 -0
  167. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/feature/test_features.py +0 -0
  168. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/model/__init__.py +0 -0
  169. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/model/test_annotations.py +0 -0
  170. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/model/test_database.py +0 -0
  171. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/model/test_handles.py +0 -0
  172. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/model/test_models.py +0 -0
  173. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/schema/__init__.py +0 -0
  174. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/schema/test_validation.py +0 -0
  175. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/test-files/execution-parameters.json +0 -0
  176. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/test-files/notebook-parameters.json +0 -0
  177. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/test_factories.py +0 -0
  178. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/tests/test_utils.py +0 -0
  179. {deriva_ml-1.17.12 → deriva_ml-1.17.13}/uv.lock +0 -0
{deriva_ml-1.17.12/src/deriva_ml.egg-info → deriva_ml-1.17.13}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: deriva-ml
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- Version: 1.17.12
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+ Version: 1.17.13
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  Summary: Utilities to simplify use of Dervia and Pandas to create reproducable ML pipelines
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  Author-email: ISRD <isrd-dev@isi.edu>
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  Requires-Python: >=3.12
{deriva_ml-1.17.12 → deriva_ml-1.17.13}/src/deriva_ml/catalog/__init__.py RENAMED
@@ -7,6 +7,7 @@ from deriva_ml.catalog.clone import (
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  CatalogProvenance,
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  CloneCatalogResult,
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  CloneDetails,
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+ OrphanStrategy,
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  clone_catalog,
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  get_catalog_provenance,
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  set_catalog_provenance,
@@ -24,6 +25,7 @@ __all__ = [
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  "CloneCatalogResult",
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  "CloneDetails",
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  "LocalizeResult",
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+ "OrphanStrategy",
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  "clone_catalog",
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  "get_catalog_provenance",
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  "localize_assets",
{deriva_ml-1.17.12 → deriva_ml-1.17.13/src/deriva_ml.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: deriva-ml
3
- Version: 1.17.12
3
+ Version: 1.17.13
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  Summary: Utilities to simplify use of Dervia and Pandas to create reproducable ML pipelines
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  Author-email: ISRD <isrd-dev@isi.edu>
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  Requires-Python: >=3.12
{deriva_ml-1.17.12 → deriva_ml-1.17.13}/.DS_Store RENAMED
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