deriva-ml 1.14.45__tar.gz → 1.14.47__tar.gz

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Files changed (110) hide show
  1. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/PKG-INFO +1 -1
  2. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/bump_version.py +1 -1
  3. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/dataset/dataset.py +1 -1
  4. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/execution/execution.py +5 -0
  5. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml.egg-info/PKG-INFO +1 -1
  6. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/.github/release-drafter.yml +0 -0
  7. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/.github/workflows/publish-docs.yml +0 -0
  8. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/.github/workflows/release.yml +0 -0
  9. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/.gitignore +0 -0
  10. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/LICENSE +0 -0
  11. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/README.md +0 -0
  12. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/.DS_Store +0 -0
  13. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/Notebooks/DerivaML Create Notes.ipynb +0 -0
  14. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/Notebooks/DerivaML Dataset.ipynb +0 -0
  15. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/Notebooks/DerivaML Execution.ipynb +0 -0
  16. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/Notebooks/DerivaML Features.ipynb +0 -0
  17. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/Notebooks/DerivaML Ingest.ipynb +0 -0
  18. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/Notebooks/DerivaML Vocabulary.ipynb +0 -0
  19. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/assets/ERD.png +0 -0
  20. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/assets/Launcher.png +0 -0
  21. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/assets/copy_minid.png +0 -0
  22. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/assets/deriva-logo.png +0 -0
  23. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/assets/deriva-ml.pdf +0 -0
  24. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/assets/sharing-at-home.pdf +0 -0
  25. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/code-docs/dataset.md +0 -0
  26. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/code-docs/dataset_aux_classes.md +0 -0
  27. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/code-docs/dataset_bag.md +0 -0
  28. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/code-docs/deriva_definitions.md +0 -0
  29. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/code-docs/deriva_ml_base.md +0 -0
  30. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/code-docs/deriva_model.md +0 -0
  31. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/code-docs/execution.md +0 -0
  32. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/code-docs/execution_configuration.md +0 -0
  33. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/code-docs/feature.md +0 -0
  34. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/code-docs/upload.md +0 -0
  35. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/index.md +0 -0
  36. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/release-notes.md +0 -0
  37. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/user-guide/datasets.md +0 -0
  38. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/user-guide/deriva_ml_structure.md +0 -0
  39. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/user-guide/execution-configuration.md +0 -0
  40. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/user-guide/file-assets.md +0 -0
  41. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/user-guide/identifiers.md +0 -0
  42. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/user-guide/install.md +0 -0
  43. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/user-guide/notebooks.md +0 -0
  44. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/user-guide/overview.md +0 -0
  45. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/mkdocs.yml +0 -0
  46. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/pyproject.toml +0 -0
  47. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/setup.cfg +0 -0
  48. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/__init__.py +0 -0
  49. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/core/__init__.py +0 -0
  50. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/core/base.py +0 -0
  51. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/core/constants.py +0 -0
  52. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/core/definitions.py +0 -0
  53. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/core/enums.py +0 -0
  54. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/core/ermrest.py +0 -0
  55. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/core/exceptions.py +0 -0
  56. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/core/filespec.py +0 -0
  57. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/dataset/__init__.py +0 -0
  58. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/dataset/aux_classes.py +0 -0
  59. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/dataset/dataset_bag.py +0 -0
  60. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/dataset/history.py +0 -0
  61. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/dataset/upload.py +0 -0
  62. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/demo_catalog.py +0 -0
  63. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/execution/__init__.py +0 -0
  64. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/execution/environment.py +0 -0
  65. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/execution/execution_configuration.py +0 -0
  66. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/execution/workflow.py +0 -0
  67. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/feature.py +0 -0
  68. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/install_kernel.py +0 -0
  69. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/model/__init__.py +0 -0
  70. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/model/catalog.py +0 -0
  71. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/model/database.py +0 -0
  72. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/model/sql_mapper.py +0 -0
  73. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/run_notebook.py +0 -0
  74. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/schema/__init__.py +0 -0
  75. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/schema/annotations.py +0 -0
  76. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/schema/check_schema.py +0 -0
  77. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/schema/create_schema.py +0 -0
  78. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/schema/deriva-ml-reference.json +0 -0
  79. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/schema/policy.json +0 -0
  80. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/schema/table_comments_utils.py +0 -0
  81. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml.egg-info/SOURCES.txt +0 -0
  82. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml.egg-info/dependency_links.txt +0 -0
  83. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml.egg-info/entry_points.txt +0 -0
  84. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml.egg-info/requires.txt +0 -0
  85. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml.egg-info/top_level.txt +0 -0
  86. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/tests/__init__.py +0 -0
  87. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/tests/conftest.py +0 -0
  88. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/tests/core/__init__.py +0 -0
  89. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/tests/core/test_basic_tables.py +0 -0
  90. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/tests/core/test_file.py +0 -0
  91. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/tests/core/test_vocabulary.py +0 -0
  92. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/tests/dataset/__init__.py +0 -0
  93. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/tests/dataset/demo-catalog-schema.json +0 -0
  94. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/tests/dataset/deriva-ml-reference.json +0 -0
  95. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/tests/dataset/eye-ai-catalog-schema.json +0 -0
  96. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/tests/dataset/test_dataset_version.py +0 -0
  97. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/tests/dataset/test_datasets.py +0 -0
  98. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/tests/dataset/test_download.py +0 -0
  99. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/tests/execution/__init__.py +0 -0
  100. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/tests/execution/test_execution.py +0 -0
  101. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/tests/execution/workflow-test.ipynb +0 -0
  102. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/tests/execution/workflow-test.py +0 -0
  103. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/tests/feature/test_features.py +0 -0
  104. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/tests/model/__init__.py +0 -0
  105. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/tests/model/test_database.py +0 -0
  106. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/tests/model/test_models.py +0 -0
  107. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/tests/test-files/execution-parameters.json +0 -0
  108. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/tests/test-files/notebook-parameters.json +0 -0
  109. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/tests/test_utils.py +0 -0
  110. {deriva_ml-1.14.45 → deriva_ml-1.14.47}/uv.lock +0 -0
{deriva_ml-1.14.45 → deriva_ml-1.14.47}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: deriva-ml
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- Version: 1.14.45
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+ Version: 1.14.47
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  Summary: Utilities to simplify use of Dervia and Pandas to create reproducable ML pipelines
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  Author-email: ISRD <isrd-dev@isi.edu>
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  Requires-Python: >=3.10
{deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/bump_version.py RENAMED
@@ -105,7 +105,7 @@ def main() -> int:
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  # Find latest semver tag with prefix
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  tag = latest_semver_tag(prefix)
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-
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+ print(f"Latest semver tag: {tag}")
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  if not tag:
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  seed_initial_tag(f"{prefix}{start}")
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  print(f"Seeded {prefix}{start}. Done.")
{deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/dataset/dataset.py RENAMED
@@ -1138,7 +1138,7 @@ class Dataset:
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  with TemporaryDirectory() as tmp_dir:
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  if self._use_minid:
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  # Get bag from S3
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- archive_path = fetch_single_file(minid.bag_url)
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+ archive_path = fetch_single_file(minid.bag_url, output_path=tmp_dir)
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  else:
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  exporter = DerivaExport(host=self._model.catalog.deriva_server.server, output_dir=tmp_dir)
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  archive_path = exporter.retrieve_file(minid.bag_url)
{deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml/execution/execution.py RENAMED
@@ -385,6 +385,11 @@ class Execution:
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  self.start_time = datetime.now()
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  self.update_status(Status.pending, "Initialize status finished.")
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+ @property
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+ def working_dir(self) -> Path:
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+ """Return the working directory for the execution."""
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+ return self._execution_root
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+
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  @property
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  def _execution_root(self) -> Path:
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  """
{deriva_ml-1.14.45 → deriva_ml-1.14.47}/src/deriva_ml.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: deriva-ml
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- Version: 1.14.45
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+ Version: 1.14.47
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  Summary: Utilities to simplify use of Dervia and Pandas to create reproducable ML pipelines
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  Author-email: ISRD <isrd-dev@isi.edu>
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  Requires-Python: >=3.10
{deriva_ml-1.14.45 → deriva_ml-1.14.47}/.gitignore RENAMED
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{deriva_ml-1.14.45 → deriva_ml-1.14.47}/LICENSE RENAMED
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{deriva_ml-1.14.45 → deriva_ml-1.14.47}/README.md RENAMED
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{deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/.DS_Store RENAMED
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{deriva_ml-1.14.45 → deriva_ml-1.14.47}/docs/index.md RENAMED
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{deriva_ml-1.14.45 → deriva_ml-1.14.47}/mkdocs.yml RENAMED
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{deriva_ml-1.14.45 → deriva_ml-1.14.47}/pyproject.toml RENAMED
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{deriva_ml-1.14.45 → deriva_ml-1.14.47}/setup.cfg RENAMED
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{deriva_ml-1.14.45 → deriva_ml-1.14.47}/uv.lock RENAMED
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