deriva-ml 1.14.40__tar.gz → 1.14.41__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/PKG-INFO +1 -1
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/run_notebook.py +3 -3
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml.egg-info/PKG-INFO +1 -1
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/.github/release-drafter.yml +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/.github/workflows/publish-docs.yml +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/.github/workflows/release.yml +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/.gitignore +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/LICENSE +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/README.md +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/.DS_Store +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/Notebooks/DerivaML Create Notes.ipynb +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/Notebooks/DerivaML Dataset.ipynb +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/Notebooks/DerivaML Execution.ipynb +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/Notebooks/DerivaML Features.ipynb +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/Notebooks/DerivaML Ingest.ipynb +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/Notebooks/DerivaML Vocabulary.ipynb +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/assets/ERD.png +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/assets/Launcher.png +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/assets/copy_minid.png +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/assets/deriva-logo.png +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/assets/deriva-ml.pdf +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/assets/sharing-at-home.pdf +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/code-docs/dataset.md +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/code-docs/dataset_aux_classes.md +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/code-docs/dataset_bag.md +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/code-docs/deriva_definitions.md +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/code-docs/deriva_ml_base.md +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/code-docs/deriva_model.md +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/code-docs/execution.md +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/code-docs/execution_configuration.md +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/code-docs/feature.md +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/code-docs/upload.md +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/index.md +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/release-notes.md +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/user-guide/datasets.md +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/user-guide/deriva_ml_structure.md +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/user-guide/execution-configuration.md +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/user-guide/file-assets.md +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/user-guide/identifiers.md +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/user-guide/install.md +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/user-guide/notebooks.md +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/docs/user-guide/overview.md +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/mkdocs.yml +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/pyproject.toml +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/setup.cfg +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/__init__.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/bump_version.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/core/__init__.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/core/base.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/core/constants.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/core/definitions.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/core/enums.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/core/ermrest.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/core/exceptions.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/core/filespec.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/dataset/__init__.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/dataset/aux_classes.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/dataset/dataset.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/dataset/dataset_bag.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/dataset/history.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/dataset/upload.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/demo_catalog.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/execution/__init__.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/execution/environment.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/execution/execution.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/execution/execution_configuration.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/execution/workflow.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/feature.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/install_kernel.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/model/__init__.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/model/catalog.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/model/database.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/model/sql_mapper.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/schema/__init__.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/schema/annotations.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/schema/check_schema.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/schema/create_schema.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/schema/deriva-ml-reference.json +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/schema/policy.json +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml/schema/table_comments_utils.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml.egg-info/SOURCES.txt +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml.egg-info/dependency_links.txt +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml.egg-info/entry_points.txt +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml.egg-info/requires.txt +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/src/deriva_ml.egg-info/top_level.txt +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/__init__.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/conftest.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/core/__init__.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/core/test_basic_tables.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/core/test_file.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/core/test_vocabulary.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/dataset/__init__.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/dataset/demo-catalog-schema.json +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/dataset/deriva-ml-reference.json +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/dataset/eye-ai-catalog-schema.json +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/dataset/test_dataset_export.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/dataset/test_dataset_version.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/dataset/test_datasets.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/dataset/test_download.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/execution/__init__.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/execution/test_execution.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/execution/workflow-test.ipynb +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/execution/workflow-test.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/feature/test_features.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/model/__init__.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/model/test_database.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/model/test_models.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/test-files/execution-parameters.json +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/test-files/notebook-parameters.json +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/tests/test_utils.py +0 -0
- {deriva_ml-1.14.40 → deriva_ml-1.14.41}/uv.lock +0 -0
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@@ -76,7 +76,7 @@ class DerivaMLRunNotebookCLI(BaseCLI):
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def main(self):
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"""Parse arguments and set up execution environment."""
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args = self.parse_cli()
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notebook_file = args.notebook_file
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notebook_file: Path = args.notebook_file
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parameter_file = args.file
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# args.parameter is now a list of [KEY, VALUE] lists
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@@ -115,11 +115,11 @@ class DerivaMLRunNotebookCLI(BaseCLI):
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print(f" {param}:{value}")
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self.run_notebook(notebook_file.resolve(), parameters, kernel=args.kernel[0], log=args.log_output)
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def run_notebook(self, notebook_file, parameters, kernel=None, log=False):
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def run_notebook(self, notebook_file: Path, parameters, kernel=None, log=False):
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url, checksum = Workflow.get_url_and_checksum(Path(notebook_file))
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os.environ["DERIVA_ML_WORKFLOW_URL"] = url
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os.environ["DERIVA_ML_WORKFLOW_CHECKSUM"] = checksum
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os.environ["DERIVA_ML_NOTEBOOK_PATH"] = notebook_file
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os.environ["DERIVA_ML_NOTEBOOK_PATH"] = notebook_file.as_posix()
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with tempfile.TemporaryDirectory() as tmpdirname:
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notebook_output = Path(tmpdirname) / Path(notebook_file).name
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