deriva-ml 1.13.3__tar.gz → 1.14.26__tar.gz

deriva_ml-1.14.26/.github/release-drafter.yml

@@ -0,0 +1,26 @@
+name-template: 'v$RESOLVED_VERSION'
+tag-template: 'v$RESOLVED_VERSION'
+
+template: |
+  ## Changes
+
+  $CHANGES
+
+categories:
+  - title: 🚀 Features
+    labels: [feature, enhancement]
+  - title: 🐛 Bug Fixes
+    labels: [bug, fix]
+  - title: 🧰 Maintenance
+    labels: [chore, refactor, maintenance]
+
+change-template: '- $TITLE (#$NUMBER)'
+no-changes-template: '- No notable changes.'
+
+exclude-labels:
+  - skip-changelog
+
+replacers:
+  - search: '\[#([0-9]+)\]'
+    replace: '[#${1}](https://github.com/${{ GITHUB_REPOSITORY }}/pull/${1})'
+    

{deriva_ml-1.13.3 → deriva_ml-1.14.26}/.github/workflows/publish-docs.yml

@@ -1,4 +1,4 @@
-name: DerivaML 
+name: Publish DerivaML Documents
 on:
   push:
     branches:
@@ -9,6 +9,7 @@ permissions:
 jobs:
   deploy:
     runs-on: ubuntu-latest
+
     steps:
       - uses: actions/checkout@v4
       - name: Configure Git Credentials

deriva_ml-1.14.26/.github/workflows/release.yml

@@ -0,0 +1,87 @@
+name: Build and Release
+
+
+  
+on:
+  push:
+    tags:
+      - 'v*.*.*'
+  workflow_dispatch:
+
+permissions:
+  id-token: write
+  contents: read
+
+jobs:
+  build:
+    name: Build Package
+    runs-on: ubuntu-latest
+    outputs:
+      artifact-name: dist
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: '3.11'
+      
+      - name: Install the latest version of uv
+        uses: astral-sh/setup-uv@v6
+
+      - name: Build package
+        run: uv build
+
+      - name: Upload built dist
+        uses: actions/upload-artifact@v4
+        with:
+          name: dist
+          path: dist/*
+
+  create-release:
+    name: Create GitHub Release
+    runs-on: ubuntu-latest
+    needs: build
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Draft GitHub Release
+        uses: release-drafter/release-drafter@v5
+        with:
+          config-name: release-drafter.yml
+          publish: true
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+
+  publish:
+    name: Publish to PyPI
+    runs-on: ubuntu-latest
+    needs: [build, create-release]
+    environment: publish  # Optional GitHub environment to protect this step
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: '3.11'
+
+      - name: Install the latest version of uv
+        uses: astral-sh/setup-uv@v6
+
+      - name: Download built dist
+        uses: actions/download-artifact@v4
+        with:
+          name: dist
+          path: dist/
+
+      - name: Publish to PyPI
+        run: uv publish --verbose
+ 

{deriva_ml-1.13.3/src/deriva_ml.egg-info → deriva_ml-1.14.26}/PKG-INFO

@@ -1,21 +1,22 @@
 Metadata-Version: 2.4
 Name: deriva-ml
-Version: 1.13.3
+Version: 1.14.26
 Summary: Utilities to simplify use of Dervia and Pandas to create reproducable ML pipelines
 Author-email: ISRD <isrd-dev@isi.edu>
 Requires-Python: >=3.10
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: bump-my-version
-Requires-Dist: deriva~=1.7.7
+Requires-Dist: deriva~=1.7.10
+Requires-Dist: deepdiff
 Requires-Dist: pandas
 Requires-Dist: regex~=2024.7.24
-Requires-Dist: pydantic>=2.10.6
+Requires-Dist: pydantic>=2.11
 Requires-Dist: semver>3.0.0
 Requires-Dist: setuptools>=64
 Requires-Dist: setuptools-scm>=8.0
 Requires-Dist: nbstripout
 Requires-Dist: papermill
+Requires-Dist: pandas-stubs==2.2.3.250527
 Dynamic: license-file
 
 # DerivaML

{deriva_ml-1.13.3 → deriva_ml-1.14.26}/docs/Notebooks/DerivaML Create Notes.ipynb

@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "94ffee41-4986-4196-b35d-b38b6e10490a",
+   "id": "0",
    "metadata": {},
    "source": [
     "DerivaML is a class library built on the Deriva Scientific Asset management system that is designed to help simplify a number of the basic operations associated with building and testing ML libraries based on common toolkits such as TensorFlow.  This notebook reviews the basic features of the DerivaML library."
@@ -10,41 +10,31 @@
   },
   {
    "cell_type": "code",
-   "id": "ff605747-195b-40a1-b915-0e799f8d0748",
-   "metadata": {
-    "ExecuteTime": {
-     "end_time": "2025-02-25T21:48:28.351714Z",
-     "start_time": "2025-02-25T21:48:28.337684Z"
-    }
-   },
+   "execution_count": null,
+   "id": "1",
+   "metadata": {},
+   "outputs": [],
    "source": [
     "%load_ext autoreload\n",
     "%autoreload 2"
-   ],
-   "outputs": [],
-   "execution_count": 1
+   ]
   },
   {
    "cell_type": "code",
-   "id": "9493a5ef-86b9-490b-a1d5-f461fdcd68ef",
-   "metadata": {
-    "ExecuteTime": {
-     "end_time": "2025-02-25T21:48:34.419914Z",
-     "start_time": "2025-02-25T21:48:33.686305Z"
-    }
-   },
+   "execution_count": null,
+   "id": "2",
+   "metadata": {},
+   "outputs": [],
    "source": [
     "import builtins\n",
     "from demo_catalog import create_demo_catalog, DemoML\n",
     "from deriva.core.utils.globus_auth_utils import GlobusNativeLogin\n",
     "from IPython.display import display, Markdown, HTML, IFrame\n"
-   ],
-   "outputs": [],
-   "execution_count": 2
+   ]
   },
   {
    "cell_type": "markdown",
-   "id": "ba06990f-6dc5-4805-9e82-0881a524bfef",
+   "id": "3",
    "metadata": {},
    "source": [
     "Set the details for the catalog we want and authenticate to the server if needed."
@@ -52,13 +42,10 @@
   },
   {
    "cell_type": "code",
-   "id": "9ee79ab7-a3f7-4c69-9c80-336871c13ec2",
-   "metadata": {
-    "ExecuteTime": {
-     "end_time": "2024-11-29T21:26:58.015044Z",
-     "start_time": "2024-11-29T21:26:57.868191Z"
-    }
-   },
+   "execution_count": null,
+   "id": "4",
+   "metadata": {},
+   "outputs": [],
    "source": [
     "hostname = 'dev.eye-ai.org'\n",
     "domain_schema = 'demo-schema'\n",
@@ -69,26 +56,14 @@
     "else:\n",
     "    gnl.login([hostname], no_local_server=True, no_browser=True, refresh_tokens=True, update_bdbag_keychain=True)\n",
     "    print(\"Login Successful\")\n"
-   ],
-   "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "You are already logged in.\n"
-     ]
-    }
-   ],
-   "execution_count": 6
+   ]
   },
   {
-   "metadata": {
-    "ExecuteTime": {
-     "end_time": "2025-02-25T21:55:24.227032Z",
-     "start_time": "2025-02-25T21:55:24.201465Z"
-    }
-   },
    "cell_type": "code",
+   "execution_count": null,
+   "id": "5",
+   "metadata": {},
+   "outputs": [],
    "source": [
     "import json\n",
     "import os\n",
@@ -116,112 +91,56 @@
     "# Usage\n",
     "notebook_file = get_notebook_filename()\n",
     "print(f\"Current Notebook: {notebook_file}\")"
-   ],
-   "id": "94d9b590bc04d3fa",
-   "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "23f783f8\n",
-      "{'message': 'Forbidden', 'reason': None}\n",
-      "message\n",
-      "Current Notebook: Error: string indices must be integers\n"
-     ]
-    }
-   ],
-   "execution_count": 8
+   ]
   },
   {
    "cell_type": "code",
-   "id": "e9bddcf0-27ea-40b3-a388-b77635586fad",
-   "metadata": {
-    "ExecuteTime": {
-     "end_time": "2024-11-29T21:27:24.811146Z",
-     "start_time": "2024-11-29T21:27:01.353095Z"
-    }
-   },
+   "execution_count": null,
+   "id": "6",
+   "metadata": {},
+   "outputs": [],
    "source": [
     "test_catalog = create_demo_catalog(hostname, domain_schema)\n",
     "ml_instance = DemoML(hostname, test_catalog.catalog_id)"
-   ],
-   "outputs": [],
-   "execution_count": 7
+   ]
   },
   {
    "cell_type": "markdown",
-   "id": "92416df1-e3f9-4097-bc19-b24712dc7242",
+   "id": "7",
    "metadata": {},
    "source": [
     "Now using TestFeatureClass, we can create some instances of the feature and add it.  We must have a exeuction_rid in order to define the feature."
    ]
   },
   {
-   "metadata": {
-    "ExecuteTime": {
-     "end_time": "2024-11-29T21:44:32.359769Z",
-     "start_time": "2024-11-29T21:44:32.301145Z"
-    }
-   },
    "cell_type": "code",
-   "source": "display(IFrame(ml_instance.chaise_url('Page'), 500, 500))\n",
-   "id": "4a7c313481859e78",
-   "outputs": [
-    {
-     "data": {
-      "text/plain": [
-       "<IPython.lib.display.IFrame at 0x17b5d6b10>"
-      ],
-      "text/html": [
-       "\n",
-       "        <iframe\n",
-       "            width=\"500\"\n",
-       "            height=\"500\"\n",
-       "            src=\"https://dev.eye-ai.org/chaise/recordset/#631/www%3APage\"\n",
-       "            frameborder=\"0\"\n",
-       "            allowfullscreen\n",
-       "            \n",
-       "        ></iframe>\n",
-       "        "
-      ]
-     },
-     "metadata": {},
-     "output_type": "display_data"
-    }
-   ],
-   "execution_count": 21
+   "execution_count": null,
+   "id": "8",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "display(IFrame(ml_instance.chaise_url('Page'), 500, 500))\n"
+   ]
   },
   {
-   "metadata": {
-    "ExecuteTime": {
-     "end_time": "2024-11-29T21:49:30.725063Z",
-     "start_time": "2024-11-29T21:49:29.753350Z"
-    }
-   },
    "cell_type": "code",
-   "source": "ml_instance.chaise_url('Page')",
-   "id": "ea200c3f5ff4d39f",
-   "outputs": [
-    {
-     "data": {
-      "text/plain": [
-       "'https://dev.eye-ai.org/chaise/recordset/#631/www:Page'"
-      ]
-     },
-     "execution_count": 23,
-     "metadata": {},
-     "output_type": "execute_result"
-    }
-   ],
-   "execution_count": 23
+   "execution_count": null,
+   "id": "9",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "ml_instance.chaise_url('Page')"
+   ]
   },
   {
-   "metadata": {},
    "cell_type": "code",
-   "source": "test_catalog.delete_ermrest_catalog(really=True)",
-   "id": "79aa46cf32c2db00",
+   "execution_count": null,
+   "id": "10",
+   "metadata": {},
    "outputs": [],
-   "execution_count": null
+   "source": [
+    "test_catalog.delete_ermrest_catalog(really=True)"
+   ]
   }
  ],
  "metadata": {