deriva-ml 1.13.2__tar.gz → 1.14.0__tar.gz

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Files changed (83) hide show
  1. {deriva_ml-1.13.2/src/deriva_ml.egg-info → deriva_ml-1.14.0}/PKG-INFO +2 -2
  2. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/Notebooks/DerivaML Dataset.ipynb +127 -597
  3. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/Notebooks/DerivaML Execution.ipynb +2 -2
  4. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/Notebooks/DerivaML Features.ipynb +173 -136
  5. deriva_ml-1.14.0/docs/Notebooks/DerivaML Ingest.ipynb +349 -0
  6. deriva_ml-1.14.0/docs/code-docs/deriva_definitions.md +2 -0
  7. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/mkdocs.yml +1 -0
  8. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/pyproject.toml +1 -1
  9. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml/database_model.py +5 -11
  10. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml/dataset.py +294 -295
  11. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml/dataset_aux_classes.py +10 -10
  12. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml/demo_catalog.py +90 -67
  13. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml/deriva_definitions.py +62 -4
  14. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml/deriva_ml_base.py +24 -29
  15. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml/deriva_model.py +17 -5
  16. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml/execution.py +23 -3
  17. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml/history.py +4 -1
  18. deriva_ml-1.14.0/src/deriva_ml/schema_setup/annotations.py +462 -0
  19. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml/schema_setup/create_schema.py +33 -65
  20. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml/schema_setup/policy.json +7 -3
  21. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml/upload.py +3 -3
  22. {deriva_ml-1.13.2 → deriva_ml-1.14.0/src/deriva_ml.egg-info}/PKG-INFO +2 -2
  23. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml.egg-info/SOURCES.txt +2 -0
  24. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml.egg-info/requires.txt +1 -1
  25. deriva_ml-1.13.2/src/deriva_ml/schema_setup/annotations.py +0 -247
  26. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/.github/workflows/publish-docs.yml +0 -0
  27. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/.gitignore +0 -0
  28. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/LICENSE +0 -0
  29. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/README.md +0 -0
  30. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/.DS_Store +0 -0
  31. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/Notebooks/DerivaML Create Notes.ipynb +0 -0
  32. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/Notebooks/DerivaML Vocabulary.ipynb +0 -0
  33. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/assets/ERD.png +0 -0
  34. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/assets/Launcher.png +0 -0
  35. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/assets/copy_minid.png +0 -0
  36. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/assets/deriva-logo.png +0 -0
  37. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/assets/deriva-ml.pdf +0 -0
  38. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/assets/sharing-at-home.pdf +0 -0
  39. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/code-docs/dataset.md +0 -0
  40. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/code-docs/dataset_aux_classes.md +0 -0
  41. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/code-docs/dataset_bag.md +0 -0
  42. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/code-docs/deriva_ml_base.md +0 -0
  43. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/code-docs/deriva_model.md +0 -0
  44. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/code-docs/execution.md +0 -0
  45. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/code-docs/execution_configuration.md +0 -0
  46. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/code-docs/feature.md +0 -0
  47. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/code-docs/upload.md +0 -0
  48. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/index.md +0 -0
  49. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/release-notes.md +0 -0
  50. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/user-guide/datasets.md +0 -0
  51. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/user-guide/deriva_ml_structure.md +0 -0
  52. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/user-guide/execution-configuration.md +0 -0
  53. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/user-guide/file-assets.md +0 -0
  54. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/user-guide/identifiers.md +0 -0
  55. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/user-guide/install.md +0 -0
  56. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/user-guide/notebooks.md +0 -0
  57. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/docs/user-guide/overview.md +0 -0
  58. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/release.sh +0 -0
  59. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/setup.cfg +0 -0
  60. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml/__init__.py +0 -0
  61. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml/dataset_bag.py +0 -0
  62. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml/execution_configuration.py +0 -0
  63. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml/execution_environment.py +0 -0
  64. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml/feature.py +0 -0
  65. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml/run_notebook.py +0 -0
  66. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml/schema_setup/__init__.py +0 -0
  67. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml/schema_setup/table_comments_utils.py +0 -0
  68. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml/test-files/execution-parameters.json +0 -0
  69. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml/test-files/notebook-parameters.json +0 -0
  70. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml/test_functions.py +0 -0
  71. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml/test_notebook.ipynb +0 -0
  72. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml.egg-info/dependency_links.txt +0 -0
  73. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml.egg-info/entry_points.txt +0 -0
  74. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/src/deriva_ml.egg-info/top_level.txt +0 -0
  75. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/tests/__init__.py +0 -0
  76. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/tests/derivaml_test.py +0 -0
  77. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/tests/runner.py +0 -0
  78. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/tests/test_basic_tables.py +0 -0
  79. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/tests/test_dataset.py +0 -0
  80. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/tests/test_download.py +0 -0
  81. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/tests/test_execution.py +0 -0
  82. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/tests/test_features.py +0 -0
  83. {deriva_ml-1.13.2 → deriva_ml-1.14.0}/tests/test_upload.py +0 -0
{deriva_ml-1.13.2/src/deriva_ml.egg-info → deriva_ml-1.14.0}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: deriva-ml
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- Version: 1.13.2
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+ Version: 1.14.0
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  Summary: Utilities to simplify use of Dervia and Pandas to create reproducable ML pipelines
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  Author-email: ISRD <isrd-dev@isi.edu>
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  Requires-Python: >=3.10
@@ -13,7 +13,7 @@ Requires-Dist: regex~=2024.7.24
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  Requires-Dist: pydantic>=2.10.6
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  Requires-Dist: semver>3.0.0
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  Requires-Dist: setuptools>=64
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- Requires-Dist: setuptools-scm<=6.0
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+ Requires-Dist: setuptools-scm>=8.0
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  Requires-Dist: nbstripout
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  Requires-Dist: papermill
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  Dynamic: license-file