deepsensor 0.4.0__tar.gz → 0.4.1__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {deepsensor-0.4.0 → deepsensor-0.4.1}/PKG-INFO +2 -2
- {deepsensor-0.4.0 → deepsensor-0.4.1}/README.md +1 -1
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/model/model.py +7 -5
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/plot.py +4 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor.egg-info/PKG-INFO +2 -2
- {deepsensor-0.4.0 → deepsensor-0.4.1}/setup.cfg +1 -1
- {deepsensor-0.4.0 → deepsensor-0.4.1}/tests/test_model.py +2 -2
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/__init__.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/active_learning/__init__.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/active_learning/acquisition_fns.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/active_learning/algorithms.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/config.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/data/__init__.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/data/loader.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/data/processor.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/data/sources.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/data/task.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/data/utils.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/errors.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/eval/__init__.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/eval/metrics.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/model/__init__.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/model/convnp.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/model/defaults.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/model/nps.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/model/pred.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/py.typed +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/tensorflow/__init__.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/torch/__init__.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/train/__init__.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor/train/train.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor.egg-info/SOURCES.txt +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor.egg-info/dependency_links.txt +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor.egg-info/not-zip-safe +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor.egg-info/requires.txt +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/deepsensor.egg-info/top_level.txt +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/pyproject.toml +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/setup.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/tests/__init__.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/tests/test_active_learning.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/tests/test_data_processor.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/tests/test_plotting.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/tests/test_task.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/tests/test_task_loader.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/tests/test_training.py +0 -0
- {deepsensor-0.4.0 → deepsensor-0.4.1}/tests/utils.py +0 -0
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.1
|
|
2
2
|
Name: deepsensor
|
|
3
|
-
Version: 0.4.
|
|
3
|
+
Version: 0.4.1
|
|
4
4
|
Summary: A Python package for modelling xarray and pandas data with neural processes.
|
|
5
5
|
Home-page: https://github.com/alan-turing-institute/deepsensor
|
|
6
6
|
Author: Tom R. Andersson
|
|
@@ -44,7 +44,7 @@ data with neural processes</p>
|
|
|
44
44
|
|
|
45
45
|
-----------
|
|
46
46
|
|
|
47
|
-
[](https://github.com/alan-turing-institute/deepsensor/releases)
|
|
48
48
|
[](https://alan-turing-institute.github.io/deepsensor/)
|
|
49
49
|

|
|
50
50
|
[](https://coveralls.io/github/alan-turing-institute/deepsensor?branch=main)
|
|
@@ -11,7 +11,7 @@ data with neural processes</p>
|
|
|
11
11
|
|
|
12
12
|
-----------
|
|
13
13
|
|
|
14
|
-
[](https://github.com/alan-turing-institute/deepsensor/releases)
|
|
15
15
|
[](https://alan-turing-institute.github.io/deepsensor/)
|
|
16
16
|

|
|
17
17
|
[](https://coveralls.io/github/alan-turing-institute/deepsensor?branch=main)
|
|
@@ -652,7 +652,7 @@ class DeepSensorModel(ProbabilisticModel):
|
|
|
652
652
|
)
|
|
653
653
|
|
|
654
654
|
if forecasting_mode:
|
|
655
|
-
pred =
|
|
655
|
+
pred = add_valid_time_coord_to_pred_and_move_time_dims(pred)
|
|
656
656
|
|
|
657
657
|
if verbose:
|
|
658
658
|
dur = time.time() - tic
|
|
@@ -661,10 +661,11 @@ class DeepSensorModel(ProbabilisticModel):
|
|
|
661
661
|
return pred
|
|
662
662
|
|
|
663
663
|
|
|
664
|
-
def
|
|
664
|
+
def add_valid_time_coord_to_pred_and_move_time_dims(pred: Prediction) -> Prediction:
|
|
665
665
|
"""
|
|
666
666
|
Add a valid time coordinate "time" to a Prediction object based on the
|
|
667
|
-
initialisation times "init_time" and lead times "lead_time"
|
|
667
|
+
initialisation times "init_time" and lead times "lead_time", and
|
|
668
|
+
reorder the time dims from ("lead_time", "init_time") to ("init_time", "lead_time").
|
|
668
669
|
|
|
669
670
|
Args:
|
|
670
671
|
pred (:class:`~.model.pred.Prediction`):
|
|
@@ -678,13 +679,14 @@ def add_valid_time_coord_to_pred(pred: Prediction) -> Prediction:
|
|
|
678
679
|
if isinstance(pred[var_ID], pd.DataFrame):
|
|
679
680
|
x = pred[var_ID].reset_index()
|
|
680
681
|
pred[var_ID]["time"] = (x["lead_time"] + x["init_time"]).values
|
|
681
|
-
|
|
682
|
-
|
|
682
|
+
pred[var_ID] = pred[var_ID].swaplevel("init_time", "lead_time")
|
|
683
|
+
pred[var_ID] = pred[var_ID].sort_index()
|
|
683
684
|
elif isinstance(pred[var_ID], xr.Dataset):
|
|
684
685
|
x = pred[var_ID]
|
|
685
686
|
pred[var_ID] = pred[var_ID].assign_coords(
|
|
686
687
|
time=x["lead_time"] + x["init_time"]
|
|
687
688
|
)
|
|
689
|
+
pred[var_ID] = pred[var_ID].transpose("init_time", "lead_time", ...)
|
|
688
690
|
else:
|
|
689
691
|
raise ValueError(f"Unsupported prediction type {type(pred[var_ID])}.")
|
|
690
692
|
return pred
|
|
@@ -954,6 +954,8 @@ def prediction(
|
|
|
954
954
|
ax = axes[row_i, col_i]
|
|
955
955
|
|
|
956
956
|
if pred.mode == "on-grid":
|
|
957
|
+
if "init_time" in pred[0].indexes:
|
|
958
|
+
raise ValueError("Plotting forecasts not currently supported.")
|
|
957
959
|
if param == "std":
|
|
958
960
|
vmin = 0
|
|
959
961
|
else:
|
|
@@ -1000,6 +1002,8 @@ def prediction(
|
|
|
1000
1002
|
# )
|
|
1001
1003
|
|
|
1002
1004
|
elif pred.mode == "off-grid":
|
|
1005
|
+
if "init_time" in pred[0].index.names:
|
|
1006
|
+
raise ValueError("Plotting forecasts not currently supported.")
|
|
1003
1007
|
import seaborn as sns
|
|
1004
1008
|
|
|
1005
1009
|
hue = (
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.1
|
|
2
2
|
Name: deepsensor
|
|
3
|
-
Version: 0.4.
|
|
3
|
+
Version: 0.4.1
|
|
4
4
|
Summary: A Python package for modelling xarray and pandas data with neural processes.
|
|
5
5
|
Home-page: https://github.com/alan-turing-institute/deepsensor
|
|
6
6
|
Author: Tom R. Andersson
|
|
@@ -44,7 +44,7 @@ data with neural processes</p>
|
|
|
44
44
|
|
|
45
45
|
-----------
|
|
46
46
|
|
|
47
|
-
[](https://github.com/alan-turing-institute/deepsensor/releases)
|
|
48
48
|
[](https://alan-turing-institute.github.io/deepsensor/)
|
|
49
49
|

|
|
50
50
|
[](https://coveralls.io/github/alan-turing-institute/deepsensor?branch=main)
|
|
@@ -659,7 +659,7 @@ class TestModel(unittest.TestCase):
|
|
|
659
659
|
)
|
|
660
660
|
|
|
661
661
|
expected_valid_times = np.array(
|
|
662
|
-
|
|
662
|
+
expected_init_times[:, None] + expected_lead_times[None, :]
|
|
663
663
|
)
|
|
664
664
|
|
|
665
665
|
tl = TaskLoader(
|
|
@@ -690,8 +690,8 @@ class TestModel(unittest.TestCase):
|
|
|
690
690
|
errors = compute_errors(pred, self.da.to_dataset())
|
|
691
691
|
for var_ID in errors.keys():
|
|
692
692
|
assert tuple(errors[var_ID].dims) == (
|
|
693
|
-
"lead_time",
|
|
694
693
|
"init_time",
|
|
694
|
+
"lead_time",
|
|
695
695
|
"x1",
|
|
696
696
|
"x2",
|
|
697
697
|
)
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|