deepcode-hku 1.0.4__tar.gz → 1.0.5__tar.gz

{deepcode_hku-1.0.4/deepcode_hku.egg-info → deepcode_hku-1.0.5}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: deepcode-hku
-Version: 1.0.4
+Version: 1.0.5
 Summary: AI Research Engine - Transform research papers into working code automatically
 Home-page: https://github.com/HKUDS/DeepCode
 Author: DeepCodeTeam
@@ -60,6 +60,10 @@ Dynamic: summary
 </tr>
 </table>
 
+<div align="center">
+<a href="https://trendshift.io/repositories/14665" target="_blank"><img src="https://trendshift.io/api/badge/repositories/14665" alt="HKUDS%2FDeepCode | Trendshift" style="width: 250px; height: 55px;" width="250" height="55"/></a>
+</div>
+
 <!-- <img src="https://readme-typing-svg.herokuapp.com?font=Russo+One&size=28&duration=2000&pause=800&color=06B6D4&background=00000000&center=true&vCenter=true&width=800&height=50&lines=%E2%9A%A1+OPEN+AGENTIC+CODING+%E2%9A%A1" alt="DeepCode Tech Subtitle" style="margin-top: 5px; filter: drop-shadow(0 0 12px #06B6D4) drop-shadow(0 0 24px rgba(6,182,212,0.4));"/> -->
 
 # <img src="https://github.com/Zongwei9888/Experiment_Images/raw/43c585dca3d21b8e4b6390d835cdd34dc4b4b23d/DeepCode_images/title_logo.svg" alt="DeepCode Logo" width="32" height="32" style="vertical-align: middle; margin-right: 8px;"/> DeepCode: Open Agentic Coding

{deepcode_hku-1.0.4 → deepcode_hku-1.0.5}/README.md

@@ -16,6 +16,10 @@
 </tr>
 </table>
 
+<div align="center">
+<a href="https://trendshift.io/repositories/14665" target="_blank"><img src="https://trendshift.io/api/badge/repositories/14665" alt="HKUDS%2FDeepCode | Trendshift" style="width: 250px; height: 55px;" width="250" height="55"/></a>
+</div>
+
 <!-- <img src="https://readme-typing-svg.herokuapp.com?font=Russo+One&size=28&duration=2000&pause=800&color=06B6D4&background=00000000&center=true&vCenter=true&width=800&height=50&lines=%E2%9A%A1+OPEN+AGENTIC+CODING+%E2%9A%A1" alt="DeepCode Tech Subtitle" style="margin-top: 5px; filter: drop-shadow(0 0 12px #06B6D4) drop-shadow(0 0 24px rgba(6,182,212,0.4));"/> -->
 
 # <img src="https://github.com/Zongwei9888/Experiment_Images/raw/43c585dca3d21b8e4b6390d835cdd34dc4b4b23d/DeepCode_images/title_logo.svg" alt="DeepCode Logo" width="32" height="32" style="vertical-align: middle; margin-right: 8px;"/> DeepCode: Open Agentic Coding

{deepcode_hku-1.0.4 → deepcode_hku-1.0.5}/__init__.py

@@ -5,7 +5,7 @@ DeepCode - AI Research Engine
 ⚡ Transform research papers into working code automatically
 """
 
-__version__ = "1.0.4"
+__version__ = "1.0.5"
 __author__ = "DeepCode Team"
 __url__ = "https://github.com/HKUDS/DeepCode"
 

{deepcode_hku-1.0.4 → deepcode_hku-1.0.5}/cli/cli_app.py

@@ -37,8 +37,7 @@ class CLIApp:
         self.app = None  # Will be initialized by workflow adapter
         self.logger = None
         self.context = None
-        # Document segmentation configuration
-        self.segmentation_config = {"enabled": True, "size_threshold_chars": 50000}
+        # Document segmentation will be managed by CLI interface
 
     async def initialize_mcp_app(self):
         """初始化MCP应用 - 使用工作流适配器"""
@@ -49,50 +48,10 @@ class CLIApp:
         """清理MCP应用 - 使用工作流适配器"""
         await self.workflow_adapter.cleanup_mcp_app()
 
-    def update_segmentation_config(self):
-        """Update document segmentation configuration in mcp_agent.config.yaml"""
-        import yaml
-        import os
-
-        config_path = os.path.join(
-            os.path.dirname(os.path.dirname(os.path.abspath(__file__))),
-            "mcp_agent.config.yaml",
-        )
-
-        try:
-            # Read current config
-            with open(config_path, "r", encoding="utf-8") as f:
-                config = yaml.safe_load(f)
-
-            # Update document segmentation settings
-            if "document_segmentation" not in config:
-                config["document_segmentation"] = {}
-
-            config["document_segmentation"]["enabled"] = self.segmentation_config[
-                "enabled"
-            ]
-            config["document_segmentation"]["size_threshold_chars"] = (
-                self.segmentation_config["size_threshold_chars"]
-            )
-
-            # Write updated config
-            with open(config_path, "w", encoding="utf-8") as f:
-                yaml.dump(config, f, default_flow_style=False, allow_unicode=True)
-
-            self.cli.print_status(
-                "📄 Document segmentation configuration updated", "success"
-            )
-
-        except Exception as e:
-            self.cli.print_status(
-                f"⚠️ Failed to update segmentation config: {str(e)}", "warning"
-            )
-
     async def process_input(self, input_source: str, input_type: str):
         """处理输入源（URL或文件）- 使用升级版智能体编排引擎"""
         try:
-            # Update segmentation configuration before processing
-            self.update_segmentation_config()
+            # Document segmentation configuration is managed by CLI interface
 
             self.cli.print_separator()
             self.cli.print_status(
@@ -281,20 +240,9 @@ class CLIApp:
                     self.cli.show_history()
 
                 elif choice in ["c", "config", "configure"]:
-                    # Sync current segmentation config from CLI interface
-                    self.segmentation_config["enabled"] = self.cli.segmentation_enabled
-                    self.segmentation_config["size_threshold_chars"] = (
-                        self.cli.segmentation_threshold
-                    )
-
+                    # Show configuration menu - all settings managed by CLI interface
                     self.cli.show_configuration_menu()
 
-                    # Sync back from CLI interface after configuration changes
-                    self.segmentation_config["enabled"] = self.cli.segmentation_enabled
-                    self.segmentation_config["size_threshold_chars"] = (
-                        self.cli.segmentation_threshold
-                    )
-
                 else:
                     self.cli.print_status(
                         "Invalid choice. Please select U, F, T, C, H, or Q.", "warning"

{deepcode_hku-1.0.4 → deepcode_hku-1.0.5}/cli/cli_interface.py

@@ -40,9 +40,67 @@ class CLIInterface:
         self.is_running = True
         self.processing_history = []
         self.enable_indexing = True  # Default configuration
-        self.segmentation_enabled = True  # Default to smart segmentation
-        self.segmentation_threshold = 50000  # Default threshold
 
+        # Load segmentation config from the same source as UI
+        self._load_segmentation_config()
+
+        # Initialize tkinter availability
+        self._init_tkinter()
+
+    def _load_segmentation_config(self):
+        """Load segmentation configuration from mcp_agent.config.yaml"""
+        try:
+            from utils.llm_utils import get_document_segmentation_config
+
+            seg_config = get_document_segmentation_config()
+            self.segmentation_enabled = seg_config.get("enabled", True)
+            self.segmentation_threshold = seg_config.get("size_threshold_chars", 50000)
+        except Exception as e:
+            print(f"⚠️ Warning: Failed to load segmentation config: {e}")
+            # Fall back to defaults
+            self.segmentation_enabled = True
+            self.segmentation_threshold = 50000
+
+    def _save_segmentation_config(self):
+        """Save segmentation configuration to mcp_agent.config.yaml"""
+        import yaml
+        import os
+
+        # Get the project root directory (where mcp_agent.config.yaml is located)
+        current_file = os.path.abspath(__file__)
+        cli_dir = os.path.dirname(current_file)  # cli directory
+        project_root = os.path.dirname(cli_dir)  # project root
+        config_path = os.path.join(project_root, "mcp_agent.config.yaml")
+
+        try:
+            # Read current config
+            with open(config_path, "r", encoding="utf-8") as f:
+                config = yaml.safe_load(f)
+
+            # Update document segmentation settings
+            if "document_segmentation" not in config:
+                config["document_segmentation"] = {}
+
+            config["document_segmentation"]["enabled"] = self.segmentation_enabled
+            config["document_segmentation"]["size_threshold_chars"] = (
+                self.segmentation_threshold
+            )
+
+            # Write updated config
+            with open(config_path, "w", encoding="utf-8") as f:
+                yaml.dump(config, f, default_flow_style=False, allow_unicode=True)
+
+            print(
+                f"{Colors.OKGREEN}✅ Document segmentation configuration updated{Colors.ENDC}"
+            )
+
+        except Exception as e:
+            print(
+                f"{Colors.WARNING}⚠️ Failed to update segmentation config: {str(e)}{Colors.ENDC}"
+            )
+
+    def _init_tkinter(self):
+        """Initialize tkinter availability check"""
         # Check tkinter availability for file dialogs
         self.tkinter_available = True
         try:
@@ -765,6 +823,8 @@ class CLIInterface:
             elif choice in ["s", "segmentation"]:
                 current_state = getattr(self, "segmentation_enabled", True)
                 self.segmentation_enabled = not current_state
+                # Save the configuration to file
+                self._save_segmentation_config()
                 seg_mode = (
                     "📄 Smart Segmentation"
                     if self.segmentation_enabled

{deepcode_hku-1.0.4 → deepcode_hku-1.0.5}/cli/main_cli.py

@@ -230,18 +230,16 @@ async def main():
             print(
                 f"\n{Colors.MAGENTA}📄 Document segmentation disabled - using traditional processing{Colors.ENDC}"
             )
-            app.segmentation_config = {
-                "enabled": False,
-                "size_threshold_chars": args.segmentation_threshold,
-            }
+            app.cli.segmentation_enabled = False
+            app.cli.segmentation_threshold = args.segmentation_threshold
+            app.cli._save_segmentation_config()
         else:
             print(
                 f"\n{Colors.BLUE}📄 Smart document segmentation enabled (threshold: {args.segmentation_threshold} chars){Colors.ENDC}"
             )
-            app.segmentation_config = {
-                "enabled": True,
-                "size_threshold_chars": args.segmentation_threshold,
-            }
+            app.cli.segmentation_enabled = True
+            app.cli.segmentation_threshold = args.segmentation_threshold
+            app.cli._save_segmentation_config()
 
         # 检查是否为直接处理模式
         if args.file or args.url or args.chat:

{deepcode_hku-1.0.4 → deepcode_hku-1.0.5}/deepcode.py

@@ -146,8 +146,81 @@ def print_banner():
     print(banner)
 
 
+def launch_paper_test(paper_name: str, fast_mode: bool = False):
+    """Launch paper testing mode"""
+    try:
+        print("\n🧪 Launching Paper Test Mode")
+        print(f"📄 Paper: {paper_name}")
+        print(f"⚡ Fast mode: {'enabled' if fast_mode else 'disabled'}")
+        print("=" * 60)
+
+        # Run the test setup
+        setup_cmd = [sys.executable, "test_paper.py", paper_name]
+        if fast_mode:
+            setup_cmd.append("--fast")
+
+        result = subprocess.run(setup_cmd, check=True)
+
+        if result.returncode == 0:
+            print("\n✅ Paper test setup completed successfully!")
+            print("📁 Files are ready in deepcode_lab/papers/")
+            print("\n💡 Next steps:")
+            print("   1. Install MCP dependencies: pip install -r requirements.txt")
+            print(
+                f"   2. Run full pipeline: python -m workflows.paper_test_engine --paper {paper_name}"
+                + (" --fast" if fast_mode else "")
+            )
+
+    except subprocess.CalledProcessError as e:
+        print(f"\n❌ Paper test setup failed: {e}")
+        sys.exit(1)
+    except Exception as e:
+        print(f"\n❌ Unexpected error: {e}")
+        sys.exit(1)
+
+
 def main():
     """Main function"""
+    # Parse command line arguments
+    if len(sys.argv) > 1:
+        if sys.argv[1] == "test" and len(sys.argv) >= 3:
+            # Paper testing mode: python deepcode.py test rice [--fast]
+            paper_name = sys.argv[2]
+            fast_mode = "--fast" in sys.argv or "-f" in sys.argv
+
+            print_banner()
+            launch_paper_test(paper_name, fast_mode)
+            return
+        elif sys.argv[1] in ["--help", "-h", "help"]:
+            print_banner()
+            print("""
+🔧 Usage:
+   python deepcode.py                    - Launch web interface
+   python deepcode.py test <paper>       - Test paper reproduction
+   python deepcode.py test <paper> --fast - Test paper (fast mode)
+
+📄 Examples:
+   python deepcode.py test rice          - Test RICE paper reproduction
+   python deepcode.py test rice --fast   - Test RICE paper (fast mode)
+
+📁 Available papers:""")
+
+            # List available papers
+            papers_dir = "papers"
+            if os.path.exists(papers_dir):
+                for item in os.listdir(papers_dir):
+                    item_path = os.path.join(papers_dir, item)
+                    if os.path.isdir(item_path):
+                        paper_md = os.path.join(item_path, "paper.md")
+                        addendum_md = os.path.join(item_path, "addendum.md")
+                        status = "✅" if os.path.exists(paper_md) else "❌"
+                        addendum_status = "📄" if os.path.exists(addendum_md) else "➖"
+                        print(f"   {status} {item} {addendum_status}")
+            print(
+                "\n   Legend: ✅ = paper.md exists, 📄 = addendum.md exists, ➖ = no addendum"
+            )
+            return
+
     print_banner()
 
     # Check dependencies
@@ -182,7 +255,7 @@ def main():
             "run",
             str(streamlit_app_path),
             "--server.port",
-            "8501",
+            "8503",
             "--server.address",
             "localhost",
             "--browser.gatherUsageStats",

{deepcode_hku-1.0.4 → deepcode_hku-1.0.5/deepcode_hku.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: deepcode-hku
-Version: 1.0.4
+Version: 1.0.5
 Summary: AI Research Engine - Transform research papers into working code automatically
 Home-page: https://github.com/HKUDS/DeepCode
 Author: DeepCodeTeam
@@ -60,6 +60,10 @@ Dynamic: summary
 </tr>
 </table>
 
+<div align="center">
+<a href="https://trendshift.io/repositories/14665" target="_blank"><img src="https://trendshift.io/api/badge/repositories/14665" alt="HKUDS%2FDeepCode | Trendshift" style="width: 250px; height: 55px;" width="250" height="55"/></a>
+</div>
+
 <!-- <img src="https://readme-typing-svg.herokuapp.com?font=Russo+One&size=28&duration=2000&pause=800&color=06B6D4&background=00000000&center=true&vCenter=true&width=800&height=50&lines=%E2%9A%A1+OPEN+AGENTIC+CODING+%E2%9A%A1" alt="DeepCode Tech Subtitle" style="margin-top: 5px; filter: drop-shadow(0 0 12px #06B6D4) drop-shadow(0 0 24px rgba(6,182,212,0.4));"/> -->
 
 # <img src="https://github.com/Zongwei9888/Experiment_Images/raw/43c585dca3d21b8e4b6390d835cdd34dc4b4b23d/DeepCode_images/title_logo.svg" alt="DeepCode Logo" width="32" height="32" style="vertical-align: middle; margin-right: 8px;"/> DeepCode: Open Agentic Coding

{deepcode_hku-1.0.4 → deepcode_hku-1.0.5}/deepcode_hku.egg-info/SOURCES.txt

@@ -56,4 +56,6 @@ workflows/agents/__init__.py
 workflows/agents/code_implementation_agent.py
 workflows/agents/document_segmentation_agent.py
 workflows/agents/memory_agent_concise.py
-workflows/agents/memory_agent_concise_index.py
+workflows/agents/memory_agent_concise_index.py
+workflows/agents/memory_agent_concise_multi.py
+workflows/agents/requirement_analysis_agent.py

{deepcode_hku-1.0.4 → deepcode_hku-1.0.5}/mcp_agent.config.yaml

@@ -75,6 +75,7 @@ mcp:
       args:
       - -y
       - '@modelcontextprotocol/server-filesystem'
+      - .
       command: npx
     github-downloader:
       args:
@@ -83,8 +84,8 @@ mcp:
       env:
         PYTHONPATH: .
 openai:
-  default_model: "anthropic/claude-sonnet-4"
+  base_max_tokens: 16384
+  default_model: anthropic/claude-3.5-sonnet
+  max_tokens_policy: adaptive
+  retry_max_tokens: 32768
 planning_mode: traditional
-
-anthropic:
-  default_model: ""

{deepcode_hku-1.0.4 → deepcode_hku-1.0.5}/mcp_agent.secrets.yaml

@@ -3,5 +3,6 @@ openai:
   base_url: ""
 
 
+
 anthropic:
   api_key: ""