debase 0.1.17__tar.gz → 0.1.18__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {debase-0.1.17 → debase-0.1.18}/PKG-INFO +1 -1
- {debase-0.1.17 → debase-0.1.18}/src/debase/_version.py +1 -1
- {debase-0.1.17 → debase-0.1.18}/src/debase/reaction_info_extractor.py +3 -2
- {debase-0.1.17 → debase-0.1.18}/src/debase.egg-info/PKG-INFO +1 -1
- {debase-0.1.17 → debase-0.1.18}/.gitignore +0 -0
- {debase-0.1.17 → debase-0.1.18}/CONTRIBUTING.md +0 -0
- {debase-0.1.17 → debase-0.1.18}/LICENSE +0 -0
- {debase-0.1.17 → debase-0.1.18}/MANIFEST.in +0 -0
- {debase-0.1.17 → debase-0.1.18}/README.md +0 -0
- {debase-0.1.17 → debase-0.1.18}/docs/README.md +0 -0
- {debase-0.1.17 → debase-0.1.18}/docs/examples/README.md +0 -0
- {debase-0.1.17 → debase-0.1.18}/environment.yml +0 -0
- {debase-0.1.17 → debase-0.1.18}/pyproject.toml +0 -0
- {debase-0.1.17 → debase-0.1.18}/setup.cfg +0 -0
- {debase-0.1.17 → debase-0.1.18}/setup.py +0 -0
- {debase-0.1.17 → debase-0.1.18}/src/__init__.py +0 -0
- {debase-0.1.17 → debase-0.1.18}/src/debase/PIPELINE_FLOW.md +0 -0
- {debase-0.1.17 → debase-0.1.18}/src/debase/__init__.py +0 -0
- {debase-0.1.17 → debase-0.1.18}/src/debase/__main__.py +0 -0
- {debase-0.1.17 → debase-0.1.18}/src/debase/build_db.py +0 -0
- {debase-0.1.17 → debase-0.1.18}/src/debase/cleanup_sequence.py +0 -0
- {debase-0.1.17 → debase-0.1.18}/src/debase/enzyme_lineage_extractor.py +0 -0
- {debase-0.1.17 → debase-0.1.18}/src/debase/lineage_format.py +0 -0
- {debase-0.1.17 → debase-0.1.18}/src/debase/substrate_scope_extractor.py +0 -0
- {debase-0.1.17 → debase-0.1.18}/src/debase/wrapper.py +0 -0
- {debase-0.1.17 → debase-0.1.18}/src/debase.egg-info/SOURCES.txt +0 -0
- {debase-0.1.17 → debase-0.1.18}/src/debase.egg-info/dependency_links.txt +0 -0
- {debase-0.1.17 → debase-0.1.18}/src/debase.egg-info/entry_points.txt +0 -0
- {debase-0.1.17 → debase-0.1.18}/src/debase.egg-info/requires.txt +0 -0
- {debase-0.1.17 → debase-0.1.18}/src/debase.egg-info/top_level.txt +0 -0
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@@ -961,8 +961,9 @@ Ignore locations that contain data for other campaigns.
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LOGGER.info("Gemini Vision: extracting metrics for %d enzymes from %s…", len(enzyme_list), ref)
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tag = f"extract_metrics_batch_vision"
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else:
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# Add enzyme names to prompt for batch extraction
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# Add enzyme names to prompt for batch extraction with explicit format requirement
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format_example = '{"enzyme1": {"yield": "99.0%", "ttn": null, ...}, "enzyme2": {"yield": "85.0%", ...}}'
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prompt = campaign_context + PROMPT_EXTRACT_METRICS + f"\n\nExtract performance data for ALL these enzyme variants:\n{enzyme_names}\n\nReturn a JSON object with enzyme names as keys, each containing the metrics.\nExample format: {format_example}\n\n=== CONTEXT ===\n" + snippet[:4000]
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LOGGER.info("Gemini: extracting metrics for %d enzymes from %s…", len(enzyme_list), ref)
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tag = f"extract_metrics_batch"
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