ddi-fw 0.0.52__tar.gz → 0.0.54__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (93) hide show
  1. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/PKG-INFO +1 -1
  2. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/pyproject.toml +1 -1
  3. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/core.py +4 -2
  4. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/experiments/pipeline.py +1 -1
  5. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw.egg-info/PKG-INFO +1 -1
  6. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/README.md +0 -0
  7. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/setup.cfg +0 -0
  8. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/__init__.py +0 -0
  9. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/db_utils.py +0 -0
  10. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/base.py +0 -0
  11. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/data/event.db +0 -0
  12. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/indexes/test_indexes.txt +0 -0
  13. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_0.txt +0 -0
  14. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_1.txt +0 -0
  15. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_2.txt +0 -0
  16. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_3.txt +0 -0
  17. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_4.txt +0 -0
  18. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/indexes/train_indexes.txt +0 -0
  19. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_0.txt +0 -0
  20. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_1.txt +0 -0
  21. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_2.txt +0 -0
  22. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_3.txt +0 -0
  23. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_4.txt +0 -0
  24. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/indexes_old/test_indexes.txt +0 -0
  25. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_0.txt +0 -0
  26. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_1.txt +0 -0
  27. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_2.txt +0 -0
  28. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_3.txt +0 -0
  29. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_4.txt +0 -0
  30. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_indexes.txt +0 -0
  31. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_0.txt +0 -0
  32. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_1.txt +0 -0
  33. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_2.txt +0 -0
  34. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_3.txt +0 -0
  35. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_4.txt +0 -0
  36. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/ddi_mdl/readme.md +0 -0
  37. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/embedding_generator.py +0 -0
  38. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/embedding_generator_new.py +0 -0
  39. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/feature_vector_generation.py +0 -0
  40. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/idf_helper.py +0 -0
  41. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/mdf_sa_ddi/__init__.py +0 -0
  42. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/mdf_sa_ddi/base.py +0 -0
  43. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/mdf_sa_ddi/df_extraction_cleanxiaoyu50.csv +0 -0
  44. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/mdf_sa_ddi/drug_information_del_noDDIxiaoyu50.csv +0 -0
  45. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/test_indexes.txt +0 -0
  46. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_0.txt +0 -0
  47. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_1.txt +0 -0
  48. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_2.txt +0 -0
  49. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_3.txt +0 -0
  50. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_4.txt +0 -0
  51. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_indexes.txt +0 -0
  52. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_0.txt +0 -0
  53. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_1.txt +0 -0
  54. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_2.txt +0 -0
  55. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_3.txt +0 -0
  56. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_4.txt +0 -0
  57. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/mdf_sa_ddi/mdf-sa-ddi.zip +0 -0
  58. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/setup_._py +0 -0
  59. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/drugbank/__init__.py +0 -0
  60. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/drugbank/drugbank.xsd +0 -0
  61. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/drugbank/drugbank_parser.py +0 -0
  62. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/drugbank/drugbank_processor.py +0 -0
  63. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/drugbank/drugbank_processor_org.py +0 -0
  64. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/drugbank/event_extractor.py +0 -0
  65. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/experiments/__init__.py +0 -0
  66. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/experiments/custom_torch_model.py +0 -0
  67. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/experiments/evaluation_helper.py +0 -0
  68. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/experiments/pipeline_builder_pattern.py +0 -0
  69. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/experiments/tensorflow_helper.py +0 -0
  70. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/experiments/test.py +0 -0
  71. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/ner/__init__.py +0 -0
  72. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/ner/mmlrestclient.py +0 -0
  73. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/ner/ner.py +0 -0
  74. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/test/basic_test.py +0 -0
  75. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/test/combination_test.py +0 -0
  76. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/test/compress_json_test.py +0 -0
  77. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/test/date_test.py +0 -0
  78. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/test/idf_score.py +0 -0
  79. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/test/jaccard_similarity.py +0 -0
  80. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/test/mlfow_test.py +0 -0
  81. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/test/sklearn-tfidf.py +0 -0
  82. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/test/test.py +0 -0
  83. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/test/torch_cuda_test.py +0 -0
  84. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/test/type_guarding_test.py +0 -0
  85. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/utils/__init__.py +0 -0
  86. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/utils/enums.py +0 -0
  87. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/utils/py7zr_helper.py +0 -0
  88. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/utils/utils.py +0 -0
  89. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/utils/zip_helper.py +0 -0
  90. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw.egg-info/SOURCES.txt +0 -0
  91. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw.egg-info/dependency_links.txt +0 -0
  92. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw.egg-info/requires.txt +0 -0
  93. {ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw.egg-info/top_level.txt +0 -0
{ddi_fw-0.0.52 → ddi_fw-0.0.54}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: ddi_fw
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- Version: 0.0.52
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+ Version: 0.0.54
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  Summary: Do not use :)
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  Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
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  Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
{ddi_fw-0.0.52 → ddi_fw-0.0.54}/pyproject.toml RENAMED
@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "ddi_fw"
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- version = "0.0.52"
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+ version = "0.0.54"
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  description = "Do not use :)"
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  readme = "README.md"
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  authors = [
{ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/datasets/core.py RENAMED
@@ -298,11 +298,13 @@ class BaseDataset(ABC):
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  combined_df = filtered_df.copy()
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  # TODO: eğer kullanılan veri setinde tui, cui veya entity bilgileri yoksa o veri setine bu sütunları eklemek için aşağısı gerekli
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- idf_calc = IDF(filtered_ner_df, [f for f in filtered_ner_df.keys()])
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+ # idf_calc = IDF(filtered_ner_df, [f for f in filtered_ner_df.keys()])
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+ idf_calc = IDF(filtered_ner_df, self.ner_columns)
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  idf_calc.calculate()
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  idf_scores_df = idf_calc.to_dataframe()
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- for key in filtered_ner_df.keys():
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+ # for key in filtered_ner_df.keys():
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+ for key in self.ner_columns:
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  threshold = 0
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  if key.startswith('tui'):
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  threshold = self.tui_threshold
{ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/experiments/pipeline.py RENAMED
@@ -83,7 +83,7 @@ class Experiment:
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  embedding_dict=embedding_dict,
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  embedding_size=embedding_size,
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  embeddings_pooling_strategy=pooling_strategy,
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- ner_df=self.ner_df, kwargs=kwargs)
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+ ner_df=self.ner_df, **kwargs)
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  X_train, X_test, y_train, y_test, X_train.index, X_test.index, train_idx_arr, val_idx_arr = self.dataset.load()
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{ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: ddi_fw
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- Version: 0.0.52
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+ Version: 0.0.54
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  Summary: Do not use :)
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  Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
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  Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
{ddi_fw-0.0.52 → ddi_fw-0.0.54}/README.md RENAMED
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{ddi_fw-0.0.52 → ddi_fw-0.0.54}/setup.cfg RENAMED
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{ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/ner/ner.py RENAMED
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{ddi_fw-0.0.52 → ddi_fw-0.0.54}/src/ddi_fw/test/test.py RENAMED
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