ddi-fw 0.0.49__tar.gz → 0.0.50__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (92) hide show
  1. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/PKG-INFO +1 -1
  2. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/pyproject.toml +1 -1
  3. ddi_fw-0.0.50/src/ddi_fw/utils/__init__.py +4 -0
  4. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/utils/py7zr_helper.py +4 -3
  5. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/utils/utils.py +17 -3
  6. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw.egg-info/PKG-INFO +1 -1
  7. ddi_fw-0.0.49/src/ddi_fw/utils/__init__.py +0 -4
  8. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/README.md +0 -0
  9. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/setup.cfg +0 -0
  10. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/__init__.py +0 -0
  11. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/core.py +0 -0
  12. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/db_utils.py +0 -0
  13. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/base.py +0 -0
  14. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/data/event.db +0 -0
  15. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/indexes/test_indexes.txt +0 -0
  16. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_0.txt +0 -0
  17. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_1.txt +0 -0
  18. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_2.txt +0 -0
  19. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_3.txt +0 -0
  20. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_4.txt +0 -0
  21. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/indexes/train_indexes.txt +0 -0
  22. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_0.txt +0 -0
  23. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_1.txt +0 -0
  24. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_2.txt +0 -0
  25. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_3.txt +0 -0
  26. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_4.txt +0 -0
  27. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/indexes_old/test_indexes.txt +0 -0
  28. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_0.txt +0 -0
  29. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_1.txt +0 -0
  30. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_2.txt +0 -0
  31. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_3.txt +0 -0
  32. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_4.txt +0 -0
  33. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_indexes.txt +0 -0
  34. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_0.txt +0 -0
  35. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_1.txt +0 -0
  36. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_2.txt +0 -0
  37. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_3.txt +0 -0
  38. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_4.txt +0 -0
  39. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/ddi_mdl/readme.md +0 -0
  40. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/embedding_generator.py +0 -0
  41. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/embedding_generator_new.py +0 -0
  42. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/feature_vector_generation.py +0 -0
  43. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/idf_helper.py +0 -0
  44. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/mdf_sa_ddi/__init__.py +0 -0
  45. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/mdf_sa_ddi/base.py +0 -0
  46. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/mdf_sa_ddi/df_extraction_cleanxiaoyu50.csv +0 -0
  47. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/mdf_sa_ddi/drug_information_del_noDDIxiaoyu50.csv +0 -0
  48. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/test_indexes.txt +0 -0
  49. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_0.txt +0 -0
  50. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_1.txt +0 -0
  51. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_2.txt +0 -0
  52. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_3.txt +0 -0
  53. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_4.txt +0 -0
  54. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_indexes.txt +0 -0
  55. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_0.txt +0 -0
  56. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_1.txt +0 -0
  57. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_2.txt +0 -0
  58. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_3.txt +0 -0
  59. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_4.txt +0 -0
  60. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/mdf_sa_ddi/mdf-sa-ddi.zip +0 -0
  61. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/datasets/setup_._py +0 -0
  62. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/drugbank/__init__.py +0 -0
  63. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/drugbank/drugbank.xsd +0 -0
  64. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/drugbank/drugbank_parser.py +0 -0
  65. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/drugbank/drugbank_processor.py +0 -0
  66. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/drugbank/drugbank_processor_org.py +0 -0
  67. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/drugbank/event_extractor.py +0 -0
  68. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/experiments/__init__.py +0 -0
  69. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/experiments/custom_torch_model.py +0 -0
  70. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/experiments/evaluation_helper.py +0 -0
  71. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/experiments/tensorflow_helper.py +0 -0
  72. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/experiments/test.py +0 -0
  73. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/ner/__init__.py +0 -0
  74. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/ner/mmlrestclient.py +0 -0
  75. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/ner/ner.py +0 -0
  76. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/test/basic_test.py +0 -0
  77. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/test/combination_test.py +0 -0
  78. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/test/compress_json_test.py +0 -0
  79. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/test/date_test.py +0 -0
  80. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/test/idf_score.py +0 -0
  81. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/test/jaccard_similarity.py +0 -0
  82. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/test/mlfow_test.py +0 -0
  83. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/test/sklearn-tfidf.py +0 -0
  84. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/test/test.py +0 -0
  85. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/test/torch_cuda_test.py +0 -0
  86. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/test/type_guarding_test.py +0 -0
  87. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/utils/enums.py +0 -0
  88. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw/utils/zip_helper.py +0 -0
  89. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw.egg-info/SOURCES.txt +0 -0
  90. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw.egg-info/dependency_links.txt +0 -0
  91. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw.egg-info/requires.txt +0 -0
  92. {ddi_fw-0.0.49 → ddi_fw-0.0.50}/src/ddi_fw.egg-info/top_level.txt +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: ddi_fw
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- Version: 0.0.49
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+ Version: 0.0.50
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  Summary: Do not use :)
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  Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
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  Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "ddi_fw"
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- version = "0.0.49"
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+ version = "0.0.50"
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  description = "Do not use :)"
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  readme = "README.md"
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  authors = [
@@ -0,0 +1,4 @@
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+ from .utils import clear_directory,create_folder_if_not_exists, utc_time_as_string,utc_time_as_string_simple_format, compress_and_save_data
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+ from .zip_helper import ZipHelper
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+ from .py7zr_helper import Py7ZipHelper
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+ from .enums import UMLSCodeTypes, DrugBankTextDataTypes
@@ -1,6 +1,6 @@
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  from collections import defaultdict
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  import math
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- from ddi_fw.utils.utils import create_folder_if_not_exists
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+ from ddi_fw.utils.utils import clear_directory, create_folder_if_not_exists
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  import py7zr
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  import os
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  from os.path import basename
@@ -24,9 +24,10 @@ class Py7ZipHelper:
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  os.path.join(folder_path, '..')))
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  # archive.write(root+"/"+file)
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- def create_archive_multiparts(self, zip_name, file_path, output_path, chunk_size):
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+ def create_archive_multiparts(self, zip_name, file_path, output_path, chunk_size, delete_existing_files:True):
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  parent_folder = os.path.dirname(file_path)
29
-
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+ if delete_existing_files:
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+ clear_directory(output_path)
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  # parts_path = f"{parent_folder}/parts"
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  create_folder_if_not_exists(output_path)
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  # file_name, file_extension = os.path.splitext(file_path)
@@ -1,11 +1,9 @@
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  import gzip
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  import json
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  import os
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-
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  from datetime import datetime, timezone
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-
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  from matplotlib import pyplot as plt
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-
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+ import shutil
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7
 
10
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  def create_folder_if_not_exists(path):
11
9
  if not os.path.exists(path):
@@ -51,6 +49,22 @@ def decompress(gzip_file):
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  return data
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53
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+ def clear_directory(directory_path):
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+ # Check if the directory exists
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+ if os.path.exists(directory_path) and os.path.isdir(directory_path):
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+ # Iterate through all files and directories in the directory
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+ for item in os.listdir(directory_path):
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+ item_path = os.path.join(directory_path, item)
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+ # Check if it's a file or a directory and remove it
59
+ if os.path.isfile(item_path):
60
+ os.remove(item_path) # Remove file
61
+ elif os.path.isdir(item_path):
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+ shutil.rmtree(item_path) # Remove directory
63
+ print(f"Cleared contents of directory: {directory_path}")
64
+ else:
65
+ print(f"The directory does not exist: {directory_path}")
66
+
67
+
54
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  if __name__ == "__main__":
55
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  # json_file = f'C:\\Users\\kivanc\\Downloads\\metrics.json'
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  # file_data = open(json_file, "r", 1).read()
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: ddi_fw
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- Version: 0.0.49
3
+ Version: 0.0.50
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  Summary: Do not use :)
5
5
  Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
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  Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
@@ -1,4 +0,0 @@
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- from .utils import create_folder_if_not_exists, utc_time_as_string,utc_time_as_string_simple_format, compress_and_save_data
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- from .zip_helper import ZipHelper
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- from .py7zr_helper import Py7ZipHelper
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- from .enums import UMLSCodeTypes, DrugBankTextDataTypes
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