ddi-fw 0.0.42__tar.gz → 0.0.43__tar.gz

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Files changed (91) hide show
  1. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/PKG-INFO +1 -3
  2. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/pyproject.toml +1 -3
  3. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/experiments/tensorflow_helper.py +8 -7
  4. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw.egg-info/PKG-INFO +1 -3
  5. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw.egg-info/requires.txt +0 -2
  6. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/README.md +0 -0
  7. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/setup.cfg +0 -0
  8. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/__init__.py +0 -0
  9. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/core.py +0 -0
  10. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/db_utils.py +0 -0
  11. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/base.py +0 -0
  12. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/data/event.db +0 -0
  13. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/indexes/test_indexes.txt +0 -0
  14. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_0.txt +0 -0
  15. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_1.txt +0 -0
  16. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_2.txt +0 -0
  17. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_3.txt +0 -0
  18. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_4.txt +0 -0
  19. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/indexes/train_indexes.txt +0 -0
  20. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_0.txt +0 -0
  21. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_1.txt +0 -0
  22. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_2.txt +0 -0
  23. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_3.txt +0 -0
  24. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_4.txt +0 -0
  25. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/indexes_old/test_indexes.txt +0 -0
  26. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_0.txt +0 -0
  27. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_1.txt +0 -0
  28. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_2.txt +0 -0
  29. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_3.txt +0 -0
  30. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_4.txt +0 -0
  31. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_indexes.txt +0 -0
  32. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_0.txt +0 -0
  33. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_1.txt +0 -0
  34. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_2.txt +0 -0
  35. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_3.txt +0 -0
  36. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_4.txt +0 -0
  37. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/ddi_mdl/readme.md +0 -0
  38. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/embedding_generator.py +0 -0
  39. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/embedding_generator_new.py +0 -0
  40. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/feature_vector_generation.py +0 -0
  41. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/idf_helper.py +0 -0
  42. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/mdf_sa_ddi/__init__.py +0 -0
  43. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/mdf_sa_ddi/base.py +0 -0
  44. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/mdf_sa_ddi/df_extraction_cleanxiaoyu50.csv +0 -0
  45. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/mdf_sa_ddi/drug_information_del_noDDIxiaoyu50.csv +0 -0
  46. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/test_indexes.txt +0 -0
  47. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_0.txt +0 -0
  48. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_1.txt +0 -0
  49. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_2.txt +0 -0
  50. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_3.txt +0 -0
  51. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_4.txt +0 -0
  52. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_indexes.txt +0 -0
  53. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_0.txt +0 -0
  54. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_1.txt +0 -0
  55. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_2.txt +0 -0
  56. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_3.txt +0 -0
  57. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_4.txt +0 -0
  58. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/mdf_sa_ddi/mdf-sa-ddi.zip +0 -0
  59. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/datasets/setup_._py +0 -0
  60. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/drugbank/__init__.py +0 -0
  61. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/drugbank/drugbank.xsd +0 -0
  62. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/drugbank/drugbank_parser.py +0 -0
  63. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/drugbank/drugbank_processor.py +0 -0
  64. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/drugbank/drugbank_processor_org.py +0 -0
  65. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/drugbank/event_extractor.py +0 -0
  66. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/experiments/__init__.py +0 -0
  67. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/experiments/custom_torch_model.py +0 -0
  68. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/experiments/evaluation_helper.py +0 -0
  69. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/experiments/test.py +0 -0
  70. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/ner/__init__.py +0 -0
  71. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/ner/mmlrestclient.py +0 -0
  72. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/ner/ner.py +0 -0
  73. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/test/basic_test.py +0 -0
  74. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/test/combination_test.py +0 -0
  75. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/test/compress_json_test.py +0 -0
  76. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/test/date_test.py +0 -0
  77. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/test/idf_score.py +0 -0
  78. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/test/jaccard_similarity.py +0 -0
  79. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/test/mlfow_test.py +0 -0
  80. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/test/sklearn-tfidf.py +0 -0
  81. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/test/test.py +0 -0
  82. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/test/torch_cuda_test.py +0 -0
  83. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/test/type_guarding_test.py +0 -0
  84. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/utils/__init__.py +0 -0
  85. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/utils/enums.py +0 -0
  86. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/utils/py7zr_helper.py +0 -0
  87. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/utils/utils.py +0 -0
  88. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw/utils/zip_helper.py +0 -0
  89. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw.egg-info/SOURCES.txt +0 -0
  90. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw.egg-info/dependency_links.txt +0 -0
  91. {ddi_fw-0.0.42 → ddi_fw-0.0.43}/src/ddi_fw.egg-info/top_level.txt +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: ddi_fw
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- Version: 0.0.42
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+ Version: 0.0.43
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  Summary: Do not use :)
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  Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
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  Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
@@ -41,5 +41,3 @@ Requires-Dist: tqdm
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  Requires-Dist: xmlschema
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  Requires-Dist: zipp
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  Requires-Dist: py7zr
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- Requires-Dist: tf2onnx
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- Requires-Dist: tensorflow==2.15.0
@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "ddi_fw"
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- version = "0.0.42"
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+ version = "0.0.43"
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  description = "Do not use :)"
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  readme = "README.md"
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  authors = [
@@ -64,8 +64,6 @@ dependencies = [
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  ,"xmlschema"
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  ,"zipp"
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  ,"py7zr"
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- ,"tf2onnx"
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- ,"tensorflow==2.15.0"
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  ]
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@@ -14,8 +14,8 @@ import time
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  from mlflow.models import infer_signature
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  from ddi_fw.experiments.evaluation_helper import evaluate
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- import tf2onnx
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- import onnx
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+ # import tf2onnx
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+ # import onnx
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  import itertools
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  import ddi_fw.utils as utils
@@ -45,7 +45,7 @@ class TFMultiModal:
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  def predict(self, combinations: list = [], generate_combinations=False):
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  self.prefix = utils.utc_time_as_string()
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- self.date = utils.utc_time_as_string_simple_format
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+ self.date = utils.utc_time_as_string_simple_format()
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  sum = np.zeros(
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  (self.y_test_label.shape[0], self.y_test_label.shape[1]))
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  single_results = dict()
@@ -165,10 +165,11 @@ class TFSingleModal:
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  signature=signature,
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  )
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  print(run.info.artifact_uri)
168
- onnx_model, _ = tf2onnx.convert.from_keras(
169
- best_model, input_signature=None, opset=13)
170
- onnx.save(onnx_model, run.info.artifact_uri +
171
- '/model/model.onnx')
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+ # todo tf2onnx not compatible with keras > 2.15
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+ # onnx_model, _ = tf2onnx.convert.from_keras(
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+ # best_model, input_signature=None, opset=13)
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+ # onnx.save(onnx_model, run.info.artifact_uri +
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+ # '/model/model.onnx')
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  utils.compress_and_save_data(
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  metrics.__dict__, run.info.artifact_uri, f'{self.date}metrics.gzip')
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  # mlflow.log_dict(metrics.__dict__, "metrics.json")
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: ddi_fw
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- Version: 0.0.42
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+ Version: 0.0.43
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  Summary: Do not use :)
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  Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
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  Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
@@ -41,5 +41,3 @@ Requires-Dist: tqdm
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  Requires-Dist: xmlschema
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  Requires-Dist: zipp
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  Requires-Dist: py7zr
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- Requires-Dist: tf2onnx
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- Requires-Dist: tensorflow==2.15.0
@@ -17,5 +17,3 @@ tqdm
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  xmlschema
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  zipp
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  py7zr
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- tf2onnx
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- tensorflow==2.15.0
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