ddi-fw 0.0.251__tar.gz → 0.0.252__tar.gz

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Files changed (49) hide show
  1. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/PKG-INFO +1 -1
  2. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/pyproject.toml +1 -1
  3. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/langchain/faiss_storage.py +11 -7
  4. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw.egg-info/PKG-INFO +1 -1
  5. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/README.md +0 -0
  6. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/setup.cfg +0 -0
  7. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/datasets/__init__.py +0 -0
  8. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/datasets/core.py +0 -0
  9. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/datasets/dataset_splitter.py +0 -0
  10. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/datasets/db_utils.py +0 -0
  11. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/datasets/setup_._py +0 -0
  12. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/langchain/__init__.py +0 -0
  13. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/langchain/chroma_storage.py +0 -0
  14. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/langchain/embeddings.py +0 -0
  15. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/langchain/sentence_splitter.py +0 -0
  16. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/langchain/storage.py +0 -0
  17. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/ml/__init__.py +0 -0
  18. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/ml/evaluation_helper.py +0 -0
  19. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/ml/ml_helper.py +0 -0
  20. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/ml/model_wrapper.py +0 -0
  21. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/ml/pytorch_wrapper.py +0 -0
  22. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/ml/tensorflow_wrapper.py +0 -0
  23. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/ml/tracking_service.py +0 -0
  24. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/ner/__init__.py +0 -0
  25. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/ner/mmlrestclient.py +0 -0
  26. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/ner/ner.py +0 -0
  27. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/pipeline/__init__.py +0 -0
  28. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/pipeline/multi_modal_combination_strategy.py +0 -0
  29. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/pipeline/multi_pipeline.py +0 -0
  30. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/pipeline/multi_pipeline_org.py +0 -0
  31. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/pipeline/ner_pipeline.py +0 -0
  32. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/pipeline/pipeline.py +0 -0
  33. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/utils/__init__.py +0 -0
  34. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/utils/categorical_data_encoding_checker.py +0 -0
  35. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/utils/enums.py +0 -0
  36. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/utils/json_helper.py +0 -0
  37. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/utils/kaggle.py +0 -0
  38. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/utils/numpy_utils.py +0 -0
  39. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/utils/package_helper.py +0 -0
  40. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/utils/py7zr_helper.py +0 -0
  41. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/utils/utils.py +0 -0
  42. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/utils/zip_helper.py +0 -0
  43. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/vectorization/__init__.py +0 -0
  44. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/vectorization/feature_vector_generation.py +0 -0
  45. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/vectorization/idf_helper.py +0 -0
  46. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw.egg-info/SOURCES.txt +0 -0
  47. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw.egg-info/dependency_links.txt +0 -0
  48. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw.egg-info/requires.txt +0 -0
  49. {ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw.egg-info/top_level.txt +0 -0
{ddi_fw-0.0.251 → ddi_fw-0.0.252}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: ddi_fw
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- Version: 0.0.251
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+ Version: 0.0.252
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  Summary: Do not use :)
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  Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
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  Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
{ddi_fw-0.0.251 → ddi_fw-0.0.252}/pyproject.toml RENAMED
@@ -6,7 +6,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "ddi_fw"
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- version = "0.0.251"
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+ version = "0.0.252"
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  description = "Do not use :)"
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  readme = "README.md"
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  authors = [
{ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/langchain/faiss_storage.py RENAMED
@@ -56,16 +56,20 @@ class FaissVectorStoreManager(BaseVectorStoreManager):
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  # uuids = [str(uuid4()) for _ in range(len(docs))]
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  # self.vector_store.add_documents(documents=docs, ids=uuids)
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-
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+
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  def initialize_embedding_dict(self, **kwargs):
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- # vector_db_persist_directory = kwargs.get("vector_db_persist_directory")
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+ """
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+ Initializes a dictionary where keys are types (e.g., 'description', 'indication'),
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+ and values are dictionaries mapping drugbank_ids to a list of their embeddings.
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+
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+ Returns:
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+ dict: A dictionary with the structure {type: {drugbank_id: [embedding]}}.
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+ """
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  self.load(self.persist_directory)
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  df = self.as_dataframe(formatter_fn=custom_formatter)
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- type_dict = (
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- df.groupby('type')
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- .apply(lambda group: dict(zip(group['id'], group['embedding'])))
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- .to_dict()
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- )
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+ type_dict = {}
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+ for drug_type, group in df.groupby('type'):
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+ type_dict[drug_type] = dict(zip(group['id'], group['embedding'].apply(lambda x: [x])))
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  return type_dict
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  def generate_vector_store(self, docs, handle_empty='zero'):
{ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: ddi_fw
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- Version: 0.0.251
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+ Version: 0.0.252
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  Summary: Do not use :)
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  Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
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  Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
{ddi_fw-0.0.251 → ddi_fw-0.0.252}/README.md RENAMED
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{ddi_fw-0.0.251 → ddi_fw-0.0.252}/setup.cfg RENAMED
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{ddi_fw-0.0.251 → ddi_fw-0.0.252}/src/ddi_fw/ner/ner.py RENAMED
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