ddi-fw 0.0.24__tar.gz → 0.0.26__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/PKG-INFO +1 -1
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/pyproject.toml +1 -1
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/utils/zip_helper.py +17 -8
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw.egg-info/PKG-INFO +1 -1
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/README.md +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/setup.cfg +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/__init__.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/core.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/db_utils.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/base.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/data/event.db +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/indexes/test_indexes.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_0.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_1.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_2.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_3.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_4.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/indexes/train_indexes.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_0.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_1.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_2.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_3.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_4.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/indexes_old/test_indexes.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_0.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_1.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_2.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_3.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_4.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_indexes.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_0.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_1.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_2.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_3.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_4.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/ddi_mdl/readme.md +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/embedding_generator.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/embedding_generator_new.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/feature_vector_generation.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/idf_helper.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/mdf_sa_ddi/__init__.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/mdf_sa_ddi/base.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/mdf_sa_ddi/df_extraction_cleanxiaoyu50.csv +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/mdf_sa_ddi/drug_information_del_noDDIxiaoyu50.csv +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/test_indexes.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_0.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_1.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_2.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_3.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_4.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_indexes.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_0.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_1.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_2.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_3.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_4.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/mdf_sa_ddi/mdf-sa-ddi.zip +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/datasets/setup_._py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/drugbank/__init__.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/drugbank/drugbank.xsd +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/drugbank/drugbank_parser.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/drugbank/drugbank_processor.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/drugbank/drugbank_processor_org.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/drugbank/event_extractor.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/experiments/__init__.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/experiments/custom_torch_model.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/experiments/evaluation_helper.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/experiments/tensorflow_helper.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/experiments/test.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/ner/__init__.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/ner/mmlrestclient.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/ner/ner.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/test/basic_test.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/test/combination_test.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/test/compress_json_test.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/test/date_test.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/test/idf_score.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/test/jaccard_similarity.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/test/mlfow_test.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/test/sklearn-tfidf.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/test/test.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/test/torch_cuda_test.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/test/type_guarding_test.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/utils/__init__.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/utils/enums.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw/utils/utils.py +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw.egg-info/SOURCES.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw.egg-info/dependency_links.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw.egg-info/requires.txt +0 -0
- {ddi_fw-0.0.24 → ddi_fw-0.0.26}/src/ddi_fw.egg-info/top_level.txt +0 -0
@@ -40,8 +40,8 @@ class ZipHelper:
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def zip_as_multipart(self, zip_name, file_path, output_path, chunk_size):
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parent_folder = os.path.dirname(file_path)
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parts_path = f"{parent_folder}/parts"
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create_folder_if_not_exists(parts_path)
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# parts_path = f"{parent_folder}/parts"
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# create_folder_if_not_exists(parts_path)
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# file_name, file_extension = os.path.splitext(file_path)
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# file_name = os.path.basename(file_path)
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file_name, folder = get_file_name_and_folder(file_path)
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@@ -52,15 +52,17 @@ class ZipHelper:
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self.zip_single_file(zip_name, file_path, output_path)
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else:
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return
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with open(
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with open(output_path+'/'+zip_name+'.zip', 'rb') as f:
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chunk_number = 1
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while True:
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chunk = f.read(chunk_size)
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if not chunk:
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break
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with open(f"{
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with open(f"{output_path}/{zip_name}.zip.part{chunk_number:03}", 'wb') as chunk_file:
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chunk_file.write(chunk)
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chunk_number += 1
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if os.path.exists(output_path+'/'+zip_name+'.zip'):
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os.remove(output_path+'/'+zip_name+'.zip')
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def zip(self, zip_prefix, input_path, output_path, chunk_size):
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files_paths = [input_path+'/' + p for p in os.listdir(input_path)]
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@@ -87,6 +89,13 @@ class ZipHelper:
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for file_path in value:
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zipObj.write(file_path, basename(file_path))
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def extract_single_file(self, file_path, output_path):
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with z.ZipFile(file_path, 'r') as z1:
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z1.extractall(path=output_path)
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'''
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Extract zip files from the given path to the output path
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'''
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def extract(self, input_path, output_path):
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files_paths = [input_path+'/' + p for p in os.listdir(input_path)]
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if not os.path.exists(output_path):
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z1.extractall(path=output_path)
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print(f'{file_path} has been extracted')
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def extract_multiparts(self,
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def extract_multiparts(self, input_path, output_path, output_file):
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parts = [input_path+'/' + p for p in os.listdir(input_path)]
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with open(f"{output_path}/{output_file}", 'wb') as outfile:
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for part in
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for part in parts:
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with open(part, 'rb') as infile:
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outfile.write(infile.read())
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self.
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self.extract_single_file(f"{output_path}/{output_file}", output_path)
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# if __name__ == "__main__":
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