ddi-fw 0.0.24__tar.gz → 0.0.25__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (90) hide show
  1. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/PKG-INFO +1 -1
  2. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/pyproject.toml +1 -1
  3. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/utils/zip_helper.py +6 -4
  4. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw.egg-info/PKG-INFO +1 -1
  5. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/README.md +0 -0
  6. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/setup.cfg +0 -0
  7. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/__init__.py +0 -0
  8. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/core.py +0 -0
  9. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/db_utils.py +0 -0
  10. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/base.py +0 -0
  11. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/data/event.db +0 -0
  12. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/indexes/test_indexes.txt +0 -0
  13. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_0.txt +0 -0
  14. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_1.txt +0 -0
  15. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_2.txt +0 -0
  16. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_3.txt +0 -0
  17. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_4.txt +0 -0
  18. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/indexes/train_indexes.txt +0 -0
  19. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_0.txt +0 -0
  20. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_1.txt +0 -0
  21. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_2.txt +0 -0
  22. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_3.txt +0 -0
  23. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_4.txt +0 -0
  24. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/indexes_old/test_indexes.txt +0 -0
  25. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_0.txt +0 -0
  26. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_1.txt +0 -0
  27. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_2.txt +0 -0
  28. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_3.txt +0 -0
  29. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_4.txt +0 -0
  30. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_indexes.txt +0 -0
  31. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_0.txt +0 -0
  32. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_1.txt +0 -0
  33. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_2.txt +0 -0
  34. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_3.txt +0 -0
  35. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_4.txt +0 -0
  36. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/ddi_mdl/readme.md +0 -0
  37. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/embedding_generator.py +0 -0
  38. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/embedding_generator_new.py +0 -0
  39. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/feature_vector_generation.py +0 -0
  40. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/idf_helper.py +0 -0
  41. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/mdf_sa_ddi/__init__.py +0 -0
  42. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/mdf_sa_ddi/base.py +0 -0
  43. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/mdf_sa_ddi/df_extraction_cleanxiaoyu50.csv +0 -0
  44. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/mdf_sa_ddi/drug_information_del_noDDIxiaoyu50.csv +0 -0
  45. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/test_indexes.txt +0 -0
  46. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_0.txt +0 -0
  47. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_1.txt +0 -0
  48. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_2.txt +0 -0
  49. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_3.txt +0 -0
  50. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_4.txt +0 -0
  51. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_indexes.txt +0 -0
  52. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_0.txt +0 -0
  53. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_1.txt +0 -0
  54. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_2.txt +0 -0
  55. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_3.txt +0 -0
  56. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_4.txt +0 -0
  57. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/mdf_sa_ddi/mdf-sa-ddi.zip +0 -0
  58. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/datasets/setup_._py +0 -0
  59. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/drugbank/__init__.py +0 -0
  60. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/drugbank/drugbank.xsd +0 -0
  61. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/drugbank/drugbank_parser.py +0 -0
  62. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/drugbank/drugbank_processor.py +0 -0
  63. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/drugbank/drugbank_processor_org.py +0 -0
  64. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/drugbank/event_extractor.py +0 -0
  65. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/experiments/__init__.py +0 -0
  66. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/experiments/custom_torch_model.py +0 -0
  67. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/experiments/evaluation_helper.py +0 -0
  68. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/experiments/tensorflow_helper.py +0 -0
  69. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/experiments/test.py +0 -0
  70. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/ner/__init__.py +0 -0
  71. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/ner/mmlrestclient.py +0 -0
  72. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/ner/ner.py +0 -0
  73. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/test/basic_test.py +0 -0
  74. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/test/combination_test.py +0 -0
  75. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/test/compress_json_test.py +0 -0
  76. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/test/date_test.py +0 -0
  77. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/test/idf_score.py +0 -0
  78. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/test/jaccard_similarity.py +0 -0
  79. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/test/mlfow_test.py +0 -0
  80. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/test/sklearn-tfidf.py +0 -0
  81. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/test/test.py +0 -0
  82. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/test/torch_cuda_test.py +0 -0
  83. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/test/type_guarding_test.py +0 -0
  84. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/utils/__init__.py +0 -0
  85. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/utils/enums.py +0 -0
  86. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/utils/utils.py +0 -0
  87. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw.egg-info/SOURCES.txt +0 -0
  88. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw.egg-info/dependency_links.txt +0 -0
  89. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw.egg-info/requires.txt +0 -0
  90. {ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw.egg-info/top_level.txt +0 -0
{ddi_fw-0.0.24 → ddi_fw-0.0.25}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: ddi_fw
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- Version: 0.0.24
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+ Version: 0.0.25
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  Summary: Do not use :)
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  Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
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  Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
{ddi_fw-0.0.24 → ddi_fw-0.0.25}/pyproject.toml RENAMED
@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "ddi_fw"
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- version = "0.0.24"
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+ version = "0.0.25"
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  description = "Do not use :)"
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  readme = "README.md"
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  authors = [
{ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/utils/zip_helper.py RENAMED
@@ -40,8 +40,8 @@ class ZipHelper:
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  def zip_as_multipart(self, zip_name, file_path, output_path, chunk_size):
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  parent_folder = os.path.dirname(file_path)
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- parts_path = f"{parent_folder}/parts"
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- create_folder_if_not_exists(parts_path)
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+ # parts_path = f"{parent_folder}/parts"
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+ # create_folder_if_not_exists(parts_path)
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  # file_name, file_extension = os.path.splitext(file_path)
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  # file_name = os.path.basename(file_path)
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  file_name, folder = get_file_name_and_folder(file_path)
@@ -52,15 +52,17 @@ class ZipHelper:
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  self.zip_single_file(zip_name, file_path, output_path)
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  else:
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  return
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- with open(file_path, 'rb') as f:
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+ with open(output_path+'/'+zip_name+'.zip', 'rb') as f:
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  chunk_number = 1
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  while True:
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  chunk = f.read(chunk_size)
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  if not chunk:
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  break
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- with open(f"{parts_path}/{file_name}.part{chunk_number:03}", 'wb') as chunk_file:
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+ with open(f"{output_path}/{zip_name}.zip.part{chunk_number:03}", 'wb') as chunk_file:
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  chunk_file.write(chunk)
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  chunk_number += 1
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+ if os.path.exists(output_path+'/'+zip_name+'.zip'):
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+ os.remove(output_path+'/'+zip_name+'.zip')
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  def zip(self, zip_prefix, input_path, output_path, chunk_size):
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  files_paths = [input_path+'/' + p for p in os.listdir(input_path)]
{ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: ddi_fw
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- Version: 0.0.24
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+ Version: 0.0.25
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  Summary: Do not use :)
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  Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
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  Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
{ddi_fw-0.0.24 → ddi_fw-0.0.25}/README.md RENAMED
File without changes
{ddi_fw-0.0.24 → ddi_fw-0.0.25}/setup.cfg RENAMED
File without changes
{ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/ner/ner.py RENAMED
File without changes
{ddi_fw-0.0.24 → ddi_fw-0.0.25}/src/ddi_fw/test/test.py RENAMED
File without changes