ddi-fw 0.0.230__tar.gz → 0.0.231__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/PKG-INFO +1 -1
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/pyproject.toml +1 -1
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/pipeline/ner_pipeline.py +5 -3
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw.egg-info/PKG-INFO +1 -1
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/README.md +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/setup.cfg +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/__init__.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/core.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/dataset_splitter.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/db_utils.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/base.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/data/event.db +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/debug.log +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes/test_indexes.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_0.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_1.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_2.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_3.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_4.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes/train_indexes.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_0.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_1.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_2.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_3.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_4.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes_old/test_indexes.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_0.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_1.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_2.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_3.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_4.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_indexes.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_0.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_1.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_2.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_3.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_4.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/readme.md +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl_text/base.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl_text/data/event.db +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl_text/indexes/test_indexes.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_0.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_1.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_2.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_3.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_4.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_indexes.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_0.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_1.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_2.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_3.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_4.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/mdf_sa_ddi/__init__.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/mdf_sa_ddi/base.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/mdf_sa_ddi/df_extraction_cleanxiaoyu50.csv +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/mdf_sa_ddi/drug_information_del_noDDIxiaoyu50.csv +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/test_indexes.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_0.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_1.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_2.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_3.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_4.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_indexes.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_0.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_1.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_2.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_3.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_4.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/mdf_sa_ddi/mdf-sa-ddi.zip +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/setup_._py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/drugbank/__init__.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/drugbank/drugbank.xsd +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/drugbank/drugbank_parser.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/drugbank/drugbank_processor.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/drugbank/drugbank_processor_org.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/drugbank/event_extractor.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/langchain/__init__.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/langchain/embeddings.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/langchain/sentence_splitter.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/langchain/storage.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/ml/__init__.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/ml/evaluation_helper.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/ml/ml_helper.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/ml/model_wrapper.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/ml/pytorch_wrapper.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/ml/tensorflow_wrapper.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/ml/tracking_service.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/ner/__init__.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/ner/mmlrestclient.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/ner/ner.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/pipeline/__init__.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/pipeline/multi_modal_combination_strategy.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/pipeline/multi_pipeline.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/pipeline/multi_pipeline_org.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/pipeline/pipeline.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/utils/__init__.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/utils/categorical_data_encoding_checker.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/utils/enums.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/utils/json_helper.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/utils/kaggle.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/utils/numpy_utils.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/utils/package_helper.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/utils/py7zr_helper.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/utils/utils.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/utils/zip_helper.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/vectorization/__init__.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/vectorization/feature_vector_generation.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/vectorization/idf_helper.py +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw.egg-info/SOURCES.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw.egg-info/dependency_links.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw.egg-info/requires.txt +0 -0
- {ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw.egg-info/top_level.txt +0 -0
@@ -96,7 +96,9 @@ class NerParameterSearch(BaseModel):
|
|
96
96
|
"entities": 0,
|
97
97
|
}
|
98
98
|
if self.dataset_additional_config:
|
99
|
-
|
99
|
+
additional_config= self.dataset_additional_config
|
100
|
+
else:
|
101
|
+
additional_config={}
|
100
102
|
|
101
103
|
for threshold in np.arange(min_threshold, max_threshold, self.increase_step):
|
102
104
|
if column.startswith("tui"):
|
@@ -105,8 +107,8 @@ class NerParameterSearch(BaseModel):
|
|
105
107
|
thresholds["cui"] = threshold
|
106
108
|
if column.startswith("entities"):
|
107
109
|
thresholds["entities"] = threshold
|
108
|
-
|
109
|
-
|
110
|
+
additional_config['ner']['thresholds'] = thresholds
|
111
|
+
kwargs = {'additional_config': additional_config}
|
110
112
|
print(f"Loading dataset for column: {column} with threshold: {threshold}")
|
111
113
|
# Create a new dataset instance for each threshold
|
112
114
|
dataset = self.dataset_type(
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
{ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_0.txt
RENAMED
File without changes
|
{ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_1.txt
RENAMED
File without changes
|
{ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_2.txt
RENAMED
File without changes
|
{ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_3.txt
RENAMED
File without changes
|
{ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_4.txt
RENAMED
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
{ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_indexes.txt
RENAMED
File without changes
|
{ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_0.txt
RENAMED
File without changes
|
{ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_1.txt
RENAMED
File without changes
|
{ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_2.txt
RENAMED
File without changes
|
{ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_3.txt
RENAMED
File without changes
|
{ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_4.txt
RENAMED
File without changes
|
File without changes
|
File without changes
|
{ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/mdf_sa_ddi/df_extraction_cleanxiaoyu50.csv
RENAMED
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
{ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_0.txt
RENAMED
File without changes
|
{ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_1.txt
RENAMED
File without changes
|
{ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_2.txt
RENAMED
File without changes
|
{ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_3.txt
RENAMED
File without changes
|
{ddi_fw-0.0.230 → ddi_fw-0.0.231}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_4.txt
RENAMED
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|