ddi-fw 0.0.221__tar.gz → 0.0.222__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (112) hide show
  1. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/PKG-INFO +1 -1
  2. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/pyproject.toml +1 -1
  3. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/base.py +4 -3
  4. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/mdf_sa_ddi/base.py +5 -3
  5. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw.egg-info/PKG-INFO +1 -1
  6. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/README.md +0 -0
  7. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/setup.cfg +0 -0
  8. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/__init__.py +0 -0
  9. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/core.py +0 -0
  10. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/dataset_splitter.py +0 -0
  11. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/db_utils.py +0 -0
  12. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/data/event.db +0 -0
  13. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/debug.log +0 -0
  14. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/indexes/test_indexes.txt +0 -0
  15. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_0.txt +0 -0
  16. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_1.txt +0 -0
  17. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_2.txt +0 -0
  18. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_3.txt +0 -0
  19. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_4.txt +0 -0
  20. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/indexes/train_indexes.txt +0 -0
  21. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_0.txt +0 -0
  22. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_1.txt +0 -0
  23. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_2.txt +0 -0
  24. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_3.txt +0 -0
  25. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_4.txt +0 -0
  26. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/indexes_old/test_indexes.txt +0 -0
  27. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_0.txt +0 -0
  28. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_1.txt +0 -0
  29. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_2.txt +0 -0
  30. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_3.txt +0 -0
  31. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_4.txt +0 -0
  32. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_indexes.txt +0 -0
  33. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_0.txt +0 -0
  34. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_1.txt +0 -0
  35. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_2.txt +0 -0
  36. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_3.txt +0 -0
  37. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_4.txt +0 -0
  38. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/readme.md +0 -0
  39. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl_text/base.py +0 -0
  40. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl_text/data/event.db +0 -0
  41. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl_text/indexes/test_indexes.txt +0 -0
  42. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_0.txt +0 -0
  43. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_1.txt +0 -0
  44. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_2.txt +0 -0
  45. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_3.txt +0 -0
  46. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_4.txt +0 -0
  47. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_indexes.txt +0 -0
  48. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_0.txt +0 -0
  49. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_1.txt +0 -0
  50. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_2.txt +0 -0
  51. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_3.txt +0 -0
  52. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_4.txt +0 -0
  53. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/mdf_sa_ddi/__init__.py +0 -0
  54. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/mdf_sa_ddi/df_extraction_cleanxiaoyu50.csv +0 -0
  55. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/mdf_sa_ddi/drug_information_del_noDDIxiaoyu50.csv +0 -0
  56. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/test_indexes.txt +0 -0
  57. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_0.txt +0 -0
  58. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_1.txt +0 -0
  59. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_2.txt +0 -0
  60. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_3.txt +0 -0
  61. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_4.txt +0 -0
  62. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_indexes.txt +0 -0
  63. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_0.txt +0 -0
  64. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_1.txt +0 -0
  65. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_2.txt +0 -0
  66. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_3.txt +0 -0
  67. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_4.txt +0 -0
  68. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/mdf_sa_ddi/mdf-sa-ddi.zip +0 -0
  69. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/setup_._py +0 -0
  70. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/drugbank/__init__.py +0 -0
  71. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/drugbank/drugbank.xsd +0 -0
  72. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/drugbank/drugbank_parser.py +0 -0
  73. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/drugbank/drugbank_processor.py +0 -0
  74. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/drugbank/drugbank_processor_org.py +0 -0
  75. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/drugbank/event_extractor.py +0 -0
  76. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/langchain/__init__.py +0 -0
  77. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/langchain/embeddings.py +0 -0
  78. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/langchain/sentence_splitter.py +0 -0
  79. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/langchain/storage.py +0 -0
  80. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/ml/__init__.py +0 -0
  81. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/ml/evaluation_helper.py +0 -0
  82. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/ml/ml_helper.py +0 -0
  83. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/ml/model_wrapper.py +0 -0
  84. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/ml/pytorch_wrapper.py +0 -0
  85. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/ml/tensorflow_wrapper.py +0 -0
  86. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/ml/tracking_service.py +0 -0
  87. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/ner/__init__.py +0 -0
  88. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/ner/mmlrestclient.py +0 -0
  89. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/ner/ner.py +0 -0
  90. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/pipeline/__init__.py +0 -0
  91. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/pipeline/multi_modal_combination_strategy.py +0 -0
  92. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/pipeline/multi_pipeline.py +0 -0
  93. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/pipeline/multi_pipeline_org.py +0 -0
  94. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/pipeline/ner_pipeline.py +0 -0
  95. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/pipeline/pipeline.py +0 -0
  96. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/utils/__init__.py +0 -0
  97. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/utils/categorical_data_encoding_checker.py +0 -0
  98. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/utils/enums.py +0 -0
  99. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/utils/json_helper.py +0 -0
  100. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/utils/kaggle.py +0 -0
  101. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/utils/numpy_utils.py +0 -0
  102. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/utils/package_helper.py +0 -0
  103. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/utils/py7zr_helper.py +0 -0
  104. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/utils/utils.py +0 -0
  105. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/utils/zip_helper.py +0 -0
  106. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/vectorization/__init__.py +0 -0
  107. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/vectorization/feature_vector_generation.py +0 -0
  108. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/vectorization/idf_helper.py +0 -0
  109. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw.egg-info/SOURCES.txt +0 -0
  110. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw.egg-info/dependency_links.txt +0 -0
  111. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw.egg-info/requires.txt +0 -0
  112. {ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw.egg-info/top_level.txt +0 -0
{ddi_fw-0.0.221 → ddi_fw-0.0.222}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: ddi_fw
3
- Version: 0.0.221
3
+ Version: 0.0.222
4
4
  Summary: Do not use :)
5
5
  Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
6
6
  Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
{ddi_fw-0.0.221 → ddi_fw-0.0.222}/pyproject.toml RENAMED
@@ -6,7 +6,7 @@ build-backend = "setuptools.build_meta"
6
6
 
7
7
  [project]
8
8
  name = "ddi_fw"
9
- version = "0.0.221"
9
+ version = "0.0.222"
10
10
  description = "Do not use :)"
11
11
  readme = "README.md"
12
12
  authors = [
{ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/ddi_mdl/base.py RENAMED
@@ -36,8 +36,8 @@ HERE = pathlib.Path(__file__).resolve().parent
36
36
 
37
37
  class DDIMDLDataset(BaseDataset,TextDatasetMixin):
38
38
  dataset_name: str = "DDIMDLDataset"
39
- index_path: str = Field(default_factory=lambda: str(
40
- pathlib.Path(__file__).resolve().parent.joinpath('indexes')))
39
+ # index_path: str = Field(default_factory=lambda: str(
40
+ # pathlib.Path(__file__).resolve().parent.joinpath('indexes')))
41
41
  # drugs_df: pd.DataFrame = Field(default_factory=pd.DataFrame)
42
42
  # ddis_df: pd.DataFrame = Field(default_factory=pd.DataFrame)
43
43
  drugs_df: Optional[pd.DataFrame] = None
@@ -65,7 +65,8 @@ class DDIMDLDataset(BaseDataset,TextDatasetMixin):
65
65
  def __init__(self, **kwargs):
66
66
 
67
67
  super().__init__(**kwargs)
68
-
68
+ self.index_path: str = Field(default_factory=lambda: str(
69
+ pathlib.Path(__file__).resolve().parent.joinpath('indexes')))
69
70
  # self.additional_config = kwargs.get('dataset_additional_config', {})
70
71
  if self.additional_config:
71
72
  ner = self.additional_config.get('ner', {})
{ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/datasets/mdf_sa_ddi/base.py RENAMED
@@ -90,8 +90,8 @@ class MDFSADDIDataset(BaseDataset,TextDatasetMixin):
90
90
  # self.index_path = kwargs.get('index_path')
91
91
 
92
92
  dataset_name: str = "MDFSADDIDataset"
93
- index_path: str = Field(default_factory=lambda: str(
94
- pathlib.Path(__file__).resolve().parent.joinpath('indexes')))
93
+ # index_path: str = Field(default_factory=lambda: str(
94
+ # pathlib.Path(__file__).resolve().parent.joinpath('indexes')))
95
95
  # drugs_df: pd.DataFrame = Field(default_factory=pd.DataFrame)
96
96
  # ddis_df: pd.DataFrame = Field(default_factory=pd.DataFrame)
97
97
  drugs_df: Optional[pd.DataFrame] = None
@@ -119,7 +119,9 @@ class MDFSADDIDataset(BaseDataset,TextDatasetMixin):
119
119
  def __init__(self, **kwargs):
120
120
 
121
121
  super().__init__(**kwargs)
122
-
122
+ self.index_path: str = Field(default_factory=lambda: str(
123
+ pathlib.Path(__file__).resolve().parent.joinpath('indexes')))
124
+
123
125
  # self.additional_config = kwargs.get('dataset_additional_config', {})
124
126
  if self.additional_config:
125
127
  ner = self.additional_config.get('ner', {})
{ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: ddi_fw
3
- Version: 0.0.221
3
+ Version: 0.0.222
4
4
  Summary: Do not use :)
5
5
  Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
6
6
  Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
{ddi_fw-0.0.221 → ddi_fw-0.0.222}/README.md RENAMED
File without changes
{ddi_fw-0.0.221 → ddi_fw-0.0.222}/setup.cfg RENAMED
File without changes
{ddi_fw-0.0.221 → ddi_fw-0.0.222}/src/ddi_fw/ner/ner.py RENAMED
File without changes