ddi-fw 0.0.215__tar.gz → 0.0.216__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/PKG-INFO +1 -1
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/pyproject.toml +1 -1
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/core.py +4 -3
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw.egg-info/PKG-INFO +1 -1
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/README.md +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/setup.cfg +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/__init__.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/dataset_splitter.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/db_utils.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/base.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/data/event.db +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/debug.log +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/indexes/test_indexes.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_0.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_1.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_2.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_3.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_4.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/indexes/train_indexes.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_0.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_1.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_2.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_3.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_4.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/indexes_old/test_indexes.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_0.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_1.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_2.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_3.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_4.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_indexes.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_0.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_1.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_2.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_3.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_4.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl/readme.md +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl_text/base.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl_text/data/event.db +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl_text/indexes/test_indexes.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_0.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_1.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_2.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_3.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_4.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_indexes.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_0.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_1.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_2.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_3.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_4.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/mdf_sa_ddi/__init__.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/mdf_sa_ddi/base.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/mdf_sa_ddi/df_extraction_cleanxiaoyu50.csv +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/mdf_sa_ddi/drug_information_del_noDDIxiaoyu50.csv +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/test_indexes.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_0.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_1.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_2.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_3.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_4.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_indexes.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_0.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_1.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_2.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_3.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_4.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/mdf_sa_ddi/mdf-sa-ddi.zip +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/datasets/setup_._py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/drugbank/__init__.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/drugbank/drugbank.xsd +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/drugbank/drugbank_parser.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/drugbank/drugbank_processor.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/drugbank/drugbank_processor_org.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/drugbank/event_extractor.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/langchain/__init__.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/langchain/embeddings.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/langchain/sentence_splitter.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/langchain/storage.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/ml/__init__.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/ml/evaluation_helper.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/ml/ml_helper.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/ml/model_wrapper.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/ml/pytorch_wrapper.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/ml/tensorflow_wrapper.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/ner/__init__.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/ner/mmlrestclient.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/ner/ner.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/pipeline/__init__.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/pipeline/multi_modal_combination_strategy.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/pipeline/multi_pipeline.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/pipeline/multi_pipeline_v2.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/pipeline/ner_pipeline.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/pipeline/pipeline.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/utils/__init__.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/utils/categorical_data_encoding_checker.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/utils/enums.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/utils/json_helper.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/utils/kaggle.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/utils/numpy_utils.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/utils/package_helper.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/utils/py7zr_helper.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/utils/utils.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/utils/zip_helper.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/vectorization/__init__.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/vectorization/feature_vector_generation.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw/vectorization/idf_helper.py +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw.egg-info/SOURCES.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw.egg-info/dependency_links.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw.egg-info/requires.txt +0 -0
- {ddi_fw-0.0.215 → ddi_fw-0.0.216}/src/ddi_fw.egg-info/top_level.txt +0 -0
@@ -88,6 +88,8 @@ class BaseDataset(BaseModel, abc.ABC):
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if self.columns is None or len(self.columns) == 0 or len(self.columns) == 1:
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# If no columns or only one column are provided, do not change the data
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# and use the entire dataset as a single input.
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train_data, test_data = self.X_train[:, :], self.X_test[:, :]
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train_data,test_data = np.stack(train_data.flatten()), np.stack(test_data.flatten())
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column = self.columns[0] if self.columns else 'default'
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items.append([f'default', np.nan_to_num(self.X_train),
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y_train_label, np.nan_to_num(self.X_test), y_test_label])
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@@ -368,9 +370,8 @@ class TextDatasetMixin(BaseModel):
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# for k, v in self.ner_threshold.items():
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# kwargs[k] = v
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if self.embedding_dict is None:
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self.embedding_dict = self.__initialize_embedding_dict()
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self.__calculate_embedding_size()
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self.embedding_dict = self.__initialize_embedding_dict()
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self.__calculate_embedding_size()
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