ddi-fw 0.0.199__tar.gz → 0.0.201__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/PKG-INFO +1 -1
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/pyproject.toml +1 -1
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/core.py +2 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/ml/ml_helper.py +14 -12
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw.egg-info/PKG-INFO +1 -1
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/README.md +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/setup.cfg +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/__init__.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/dataset_splitter.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/db_utils.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/base.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/data/event.db +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/debug.log +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/indexes/test_indexes.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_0.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_1.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_2.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_3.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_4.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/indexes/train_indexes.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_0.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_1.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_2.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_3.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_4.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/indexes_old/test_indexes.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_0.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_1.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_2.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_3.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_4.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_indexes.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_0.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_1.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_2.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_3.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_4.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl/readme.md +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl_text/base.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl_text/data/event.db +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl_text/indexes/test_indexes.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_0.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_1.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_2.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_3.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_4.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_indexes.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_0.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_1.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_2.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_3.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_4.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/mdf_sa_ddi/__init__.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/mdf_sa_ddi/base.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/mdf_sa_ddi/df_extraction_cleanxiaoyu50.csv +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/mdf_sa_ddi/drug_information_del_noDDIxiaoyu50.csv +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/test_indexes.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_0.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_1.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_2.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_3.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_4.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_indexes.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_0.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_1.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_2.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_3.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_4.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/mdf_sa_ddi/mdf-sa-ddi.zip +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/datasets/setup_._py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/drugbank/__init__.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/drugbank/drugbank.xsd +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/drugbank/drugbank_parser.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/drugbank/drugbank_processor.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/drugbank/drugbank_processor_org.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/drugbank/event_extractor.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/langchain/__init__.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/langchain/embeddings.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/langchain/sentence_splitter.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/langchain/storage.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/ml/__init__.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/ml/evaluation_helper.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/ml/model_wrapper.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/ml/pytorch_wrapper.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/ml/tensorflow_wrapper.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/ner/__init__.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/ner/mmlrestclient.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/ner/ner.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/pipeline/__init__.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/pipeline/multi_modal_combination_strategy.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/pipeline/multi_pipeline.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/pipeline/ner_pipeline.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/pipeline/pipeline.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/utils/__init__.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/utils/categorical_data_encoding_checker.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/utils/enums.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/utils/json_helper.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/utils/kaggle.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/utils/numpy_utils.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/utils/package_helper.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/utils/py7zr_helper.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/utils/utils.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/utils/zip_helper.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/vectorization/__init__.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/vectorization/feature_vector_generation.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw/vectorization/idf_helper.py +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw.egg-info/SOURCES.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw.egg-info/dependency_links.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw.egg-info/requires.txt +0 -0
- {ddi_fw-0.0.199 → ddi_fw-0.0.201}/src/ddi_fw.egg-info/top_level.txt +0 -0
@@ -95,6 +95,8 @@ class BaseDataset(BaseModel, abc.ABC):
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for index, column in enumerate(self.columns):
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train_data, test_data = self.X_train[:,
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index], self.X_test[:, index]
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#TODO üstteki satır ile alttaki tek satır olsun, tolist() ile numpy array'e çevrilmesin, numpy array zaten ama uyarı verdiği için böyle
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train_data,test_data = np.stack(train_data.tolist()), np.stack(test_data.tolist()
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items.append([f'{column}', np.nan_to_num(train_data),
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y_train_label, np.nan_to_num(test_data), y_test_label])
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@@ -99,23 +99,25 @@ class MultiModalRunner:
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self.train_idx_arr, self.val_idx_arr, train_data, train_label, test_data, test_label)
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else:
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raise Exception("check configurations")
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name =
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logs, metrics, prediction = single_modal.fit_and_evaluate()
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self.result.add_metric(name, metrics)
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single_results[name] = prediction
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else: # TODO default model maybe?
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print("Default model will be used")
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name = self.default_model.get('name')
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# input_type = m.get('input_type')
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model_type = get_import(self.default_model.get("model_type"))
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kwargs = self.default_model.get('params')
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for item in self.items:
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T = self.__create_model(self.library)
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single_modal = T(self.date, name, model_type,
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use_mlflow=self.use_mlflow, **kwargs)
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item = self.items[0]
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single_modal.set_data(
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self.train_idx_arr, self.val_idx_arr, item[1], item[2], item[3], item[4])
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logs, metrics, prediction = single_modal.fit_and_evaluate()
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self.result.add_metric(name, metrics)
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single_results[name] = prediction
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def predict(self, combinations: list = [], generate_combinations=False):
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self.prefix = utils.utc_time_as_string()
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