ddi-fw 0.0.188__tar.gz → 0.0.189__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (109) hide show
  1. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/PKG-INFO +1 -1
  2. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/pyproject.toml +1 -1
  3. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/core.py +4 -2
  4. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/ml/ml_helper.py +4 -3
  5. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/ml/tensorflow_wrapper.py +1 -1
  6. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw.egg-info/PKG-INFO +1 -1
  7. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/README.md +0 -0
  8. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/setup.cfg +0 -0
  9. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/__init__.py +0 -0
  10. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/dataset_splitter.py +0 -0
  11. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/db_utils.py +0 -0
  12. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/base.py +0 -0
  13. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/data/event.db +0 -0
  14. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/debug.log +0 -0
  15. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/indexes/test_indexes.txt +0 -0
  16. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_0.txt +0 -0
  17. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_1.txt +0 -0
  18. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_2.txt +0 -0
  19. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_3.txt +0 -0
  20. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_4.txt +0 -0
  21. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/indexes/train_indexes.txt +0 -0
  22. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_0.txt +0 -0
  23. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_1.txt +0 -0
  24. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_2.txt +0 -0
  25. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_3.txt +0 -0
  26. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_4.txt +0 -0
  27. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/indexes_old/test_indexes.txt +0 -0
  28. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_0.txt +0 -0
  29. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_1.txt +0 -0
  30. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_2.txt +0 -0
  31. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_3.txt +0 -0
  32. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_4.txt +0 -0
  33. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_indexes.txt +0 -0
  34. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_0.txt +0 -0
  35. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_1.txt +0 -0
  36. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_2.txt +0 -0
  37. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_3.txt +0 -0
  38. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_4.txt +0 -0
  39. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl/readme.md +0 -0
  40. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl_text/base.py +0 -0
  41. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl_text/data/event.db +0 -0
  42. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl_text/indexes/test_indexes.txt +0 -0
  43. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_0.txt +0 -0
  44. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_1.txt +0 -0
  45. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_2.txt +0 -0
  46. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_3.txt +0 -0
  47. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_4.txt +0 -0
  48. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_indexes.txt +0 -0
  49. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_0.txt +0 -0
  50. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_1.txt +0 -0
  51. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_2.txt +0 -0
  52. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_3.txt +0 -0
  53. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_4.txt +0 -0
  54. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/mdf_sa_ddi/__init__.py +0 -0
  55. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/mdf_sa_ddi/base.py +0 -0
  56. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/mdf_sa_ddi/df_extraction_cleanxiaoyu50.csv +0 -0
  57. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/mdf_sa_ddi/drug_information_del_noDDIxiaoyu50.csv +0 -0
  58. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/test_indexes.txt +0 -0
  59. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_0.txt +0 -0
  60. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_1.txt +0 -0
  61. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_2.txt +0 -0
  62. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_3.txt +0 -0
  63. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_4.txt +0 -0
  64. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_indexes.txt +0 -0
  65. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_0.txt +0 -0
  66. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_1.txt +0 -0
  67. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_2.txt +0 -0
  68. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_3.txt +0 -0
  69. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_4.txt +0 -0
  70. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/mdf_sa_ddi/mdf-sa-ddi.zip +0 -0
  71. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/datasets/setup_._py +0 -0
  72. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/drugbank/__init__.py +0 -0
  73. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/drugbank/drugbank.xsd +0 -0
  74. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/drugbank/drugbank_parser.py +0 -0
  75. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/drugbank/drugbank_processor.py +0 -0
  76. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/drugbank/drugbank_processor_org.py +0 -0
  77. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/drugbank/event_extractor.py +0 -0
  78. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/langchain/__init__.py +0 -0
  79. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/langchain/embeddings.py +0 -0
  80. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/langchain/sentence_splitter.py +0 -0
  81. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/langchain/storage.py +0 -0
  82. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/ml/__init__.py +0 -0
  83. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/ml/evaluation_helper.py +0 -0
  84. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/ml/model_wrapper.py +0 -0
  85. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/ml/pytorch_wrapper.py +0 -0
  86. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/ner/__init__.py +0 -0
  87. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/ner/mmlrestclient.py +0 -0
  88. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/ner/ner.py +0 -0
  89. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/pipeline/__init__.py +0 -0
  90. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/pipeline/multi_modal_combination_strategy.py +0 -0
  91. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/pipeline/multi_pipeline.py +0 -0
  92. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/pipeline/ner_pipeline.py +0 -0
  93. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/pipeline/pipeline.py +0 -0
  94. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/utils/__init__.py +0 -0
  95. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/utils/categorical_data_encoding_checker.py +0 -0
  96. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/utils/enums.py +0 -0
  97. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/utils/json_helper.py +0 -0
  98. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/utils/kaggle.py +0 -0
  99. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/utils/package_helper.py +0 -0
  100. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/utils/py7zr_helper.py +0 -0
  101. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/utils/utils.py +0 -0
  102. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/utils/zip_helper.py +0 -0
  103. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/vectorization/__init__.py +0 -0
  104. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/vectorization/feature_vector_generation.py +0 -0
  105. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw/vectorization/idf_helper.py +0 -0
  106. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw.egg-info/SOURCES.txt +0 -0
  107. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw.egg-info/dependency_links.txt +0 -0
  108. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw.egg-info/requires.txt +0 -0
  109. {ddi_fw-0.0.188 → ddi_fw-0.0.189}/src/ddi_fw.egg-info/top_level.txt +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: ddi_fw
3
- Version: 0.0.188
3
+ Version: 0.0.189
4
4
  Summary: Do not use :)
5
5
  Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
6
6
  Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
@@ -6,7 +6,7 @@ build-backend = "setuptools.build_meta"
6
6
 
7
7
  [project]
8
8
  name = "ddi_fw"
9
- version = "0.0.188"
9
+ version = "0.0.189"
10
10
  description = "Do not use :)"
11
11
  readme = "README.md"
12
12
  authors = [
@@ -158,9 +158,11 @@ class BaseDataset(BaseModel):
158
158
  y_test = test[self.class_column]
159
159
 
160
160
  self.X_train = np.array(X_train)
161
- self.y_train = np.array(y_train)
161
+ # self.y_train = np.array(y_train)
162
+ self.y_train = np.array(y_train.tolist())
162
163
  self.X_test = np.array(X_test)
163
- self.y_test = np.array(y_test)
164
+ # self.y_test = np.array(y_test)
165
+ self.y_test = np.array(y_test.tolist())
164
166
 
165
167
  self.train_indexes = X_train.index
166
168
  self.test_indexes = X_test.index
@@ -57,7 +57,7 @@ class MultiModalRunner:
57
57
  raise ValueError(
58
58
  "Unsupported library type. Choose 'tensorflow' or 'pytorch'.")
59
59
 
60
- def __predict(self,single_results):
60
+ def __predict(self, single_results):
61
61
  item_dict = {t[0]: t for t in self.items}
62
62
  print("multi_modal")
63
63
  print(self.multi_modal)
@@ -71,7 +71,8 @@ class MultiModalRunner:
71
71
  model_type = get_import(m.get("model_type"))
72
72
  kwargs = m.get('params')
73
73
  T = self.__create_model(self.library)
74
- single_modal = T(self.date, name, model_type, **kwargs)
74
+ single_modal = T(self.date, name, model_type,
75
+ use_mlflow=self.use_mlflow, **kwargs)
75
76
  if input_type == '1D':
76
77
  item = item_dict[input]
77
78
  single_modal.set_data(
@@ -79,7 +80,7 @@ class MultiModalRunner:
79
80
  elif input_type == '2D':
80
81
  # check keys
81
82
  filtered_dict = {k: item_dict[k]
82
- for k in inputs if k in item_dict}
83
+ for k in inputs if k in item_dict}
83
84
  print(filtered_dict.keys())
84
85
  first_input = next(iter(filtered_dict.values()))
85
86
  train_data_list = [f[1] for f in filtered_dict.values()]
@@ -64,7 +64,7 @@ def convert_to_categorical(arr, num_classes):
64
64
 
65
65
  class TFModelWrapper(ModelWrapper):
66
66
 
67
- def __init__(self, date, descriptor, model_func, use_mlflow=True, **kwargs):
67
+ def __init__(self, date, descriptor, model_func, use_mlflow=False, **kwargs):
68
68
  super().__init__(date, descriptor, model_func, **kwargs)
69
69
  self.batch_size = kwargs.get('batch_size', 128)
70
70
  self.epochs = kwargs.get('epochs', 100)
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: ddi_fw
3
- Version: 0.0.188
3
+ Version: 0.0.189
4
4
  Summary: Do not use :)
5
5
  Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
6
6
  Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
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