ddi-fw 0.0.166__tar.gz → 0.0.168__tar.gz

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Files changed (108) hide show
  1. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/PKG-INFO +10 -11
  2. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/pyproject.toml +11 -13
  3. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw.egg-info/PKG-INFO +10 -11
  4. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw.egg-info/requires.txt +9 -10
  5. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/README.md +0 -0
  6. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/setup.cfg +0 -0
  7. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/__init__.py +0 -0
  8. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/core.py +0 -0
  9. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/dataset_splitter.py +0 -0
  10. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/db_utils.py +0 -0
  11. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/base.py +0 -0
  12. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/data/event.db +0 -0
  13. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/debug.log +0 -0
  14. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/indexes/test_indexes.txt +0 -0
  15. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_0.txt +0 -0
  16. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_1.txt +0 -0
  17. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_2.txt +0 -0
  18. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_3.txt +0 -0
  19. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_4.txt +0 -0
  20. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/indexes/train_indexes.txt +0 -0
  21. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_0.txt +0 -0
  22. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_1.txt +0 -0
  23. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_2.txt +0 -0
  24. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_3.txt +0 -0
  25. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_4.txt +0 -0
  26. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/indexes_old/test_indexes.txt +0 -0
  27. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_0.txt +0 -0
  28. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_1.txt +0 -0
  29. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_2.txt +0 -0
  30. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_3.txt +0 -0
  31. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_4.txt +0 -0
  32. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_indexes.txt +0 -0
  33. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_0.txt +0 -0
  34. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_1.txt +0 -0
  35. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_2.txt +0 -0
  36. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_3.txt +0 -0
  37. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_4.txt +0 -0
  38. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl/readme.md +0 -0
  39. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl_text/base.py +0 -0
  40. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl_text/data/event.db +0 -0
  41. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl_text/indexes/test_indexes.txt +0 -0
  42. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_0.txt +0 -0
  43. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_1.txt +0 -0
  44. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_2.txt +0 -0
  45. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_3.txt +0 -0
  46. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_4.txt +0 -0
  47. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_indexes.txt +0 -0
  48. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_0.txt +0 -0
  49. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_1.txt +0 -0
  50. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_2.txt +0 -0
  51. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_3.txt +0 -0
  52. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_4.txt +0 -0
  53. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/mdf_sa_ddi/__init__.py +0 -0
  54. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/mdf_sa_ddi/base.py +0 -0
  55. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/mdf_sa_ddi/df_extraction_cleanxiaoyu50.csv +0 -0
  56. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/mdf_sa_ddi/drug_information_del_noDDIxiaoyu50.csv +0 -0
  57. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/test_indexes.txt +0 -0
  58. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_0.txt +0 -0
  59. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_1.txt +0 -0
  60. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_2.txt +0 -0
  61. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_3.txt +0 -0
  62. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_4.txt +0 -0
  63. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_indexes.txt +0 -0
  64. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_0.txt +0 -0
  65. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_1.txt +0 -0
  66. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_2.txt +0 -0
  67. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_3.txt +0 -0
  68. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_4.txt +0 -0
  69. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/mdf_sa_ddi/mdf-sa-ddi.zip +0 -0
  70. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/datasets/setup_._py +0 -0
  71. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/drugbank/__init__.py +0 -0
  72. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/drugbank/drugbank.xsd +0 -0
  73. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/drugbank/drugbank_parser.py +0 -0
  74. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/drugbank/drugbank_processor.py +0 -0
  75. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/drugbank/drugbank_processor_org.py +0 -0
  76. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/drugbank/event_extractor.py +0 -0
  77. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/langchain/__init__.py +0 -0
  78. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/langchain/embeddings.py +0 -0
  79. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/langchain/sentence_splitter.py +0 -0
  80. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/langchain/storage.py +0 -0
  81. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/ml/__init__.py +0 -0
  82. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/ml/evaluation_helper.py +0 -0
  83. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/ml/ml_helper.py +0 -0
  84. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/ml/model_wrapper.py +0 -0
  85. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/ml/pytorch_wrapper.py +0 -0
  86. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/ml/tensorflow_wrapper.py +0 -0
  87. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/ner/__init__.py +0 -0
  88. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/ner/mmlrestclient.py +0 -0
  89. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/ner/ner.py +0 -0
  90. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/pipeline/__init__.py +0 -0
  91. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/pipeline/multi_modal_combination_strategy.py +0 -0
  92. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/pipeline/multi_pipeline.py +0 -0
  93. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/pipeline/ner_pipeline.py +0 -0
  94. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/pipeline/pipeline.py +0 -0
  95. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/utils/__init__.py +0 -0
  96. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/utils/enums.py +0 -0
  97. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/utils/json_helper.py +0 -0
  98. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/utils/kaggle.py +0 -0
  99. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/utils/package_helper.py +0 -0
  100. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/utils/py7zr_helper.py +0 -0
  101. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/utils/utils.py +0 -0
  102. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/utils/zip_helper.py +0 -0
  103. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/vectorization/__init__.py +0 -0
  104. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/vectorization/feature_vector_generation.py +0 -0
  105. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw/vectorization/idf_helper.py +0 -0
  106. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw.egg-info/SOURCES.txt +0 -0
  107. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw.egg-info/dependency_links.txt +0 -0
  108. {ddi_fw-0.0.166 → ddi_fw-0.0.168}/src/ddi_fw.egg-info/top_level.txt +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: ddi_fw
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- Version: 0.0.166
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+ Version: 0.0.168
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  Summary: Do not use :)
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  Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
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  Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
@@ -29,25 +29,24 @@ Requires-Dist: py7zr==0.22.0
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  Requires-Dist: xmlschema==3.4.2
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  Provides-Extra: llm
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  Requires-Dist: sentence-transformers<4.0.0,>=3.0.1; extra == "llm"
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- Requires-Dist: transformers<4.50.0,>=4.42.4; extra == "llm"
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+ Requires-Dist: transformers<=4.50.0,>=4.42.4; extra == "llm"
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  Requires-Dist: stanza<=1.10.1,>=1.9.2; extra == "llm"
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  Requires-Dist: tokenizers>=0.19.1; extra == "llm"
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  Requires-Dist: openai>=1.52.2; extra == "llm"
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  Requires-Dist: langchain>=0.3.4; extra == "llm"
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- Requires-Dist: langchain_community==0.3.3; extra == "llm"
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+ Requires-Dist: langchain_community>0.3.16; extra == "llm"
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  Requires-Dist: chromadb>=0.5.15; extra == "llm"
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  Requires-Dist: nltk>=3.8.1; extra == "llm"
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- Requires-Dist: unstructured==0.16.3; extra == "llm"
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  Provides-Extra: ml
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- Requires-Dist: scikit-learn==1.5.2; extra == "ml"
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- Requires-Dist: tensorflow<2.18.0,>=2.17.0; extra == "ml"
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- Requires-Dist: tf-keras==2.17.0; extra == "ml"
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+ Requires-Dist: scikit-learn<=1.6.1,>=1.5.2; extra == "ml"
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+ Requires-Dist: tensorflow<=2.18.0,>=2.17.0; extra == "ml"
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+ Requires-Dist: tf-keras<2.18.0,>=2.17.0; extra == "ml"
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  Requires-Dist: mlflow<=2.20.0,>=2.16.1; extra == "ml"
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  Requires-Dist: accelerate>=0.33.0; extra == "ml"
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- Requires-Dist: scipy==1.13.1; extra == "ml"
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+ Requires-Dist: scipy<=1.14.1,>=1.13.1; extra == "ml"
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  Requires-Dist: plotly==5.24.1; extra == "ml"
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- Requires-Dist: matplotlib==3.8.0; extra == "ml"
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- Requires-Dist: datasets==3.0.2; extra == "ml"
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+ Requires-Dist: matplotlib<=3.10.0,>=3.8.0; extra == "ml"
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+ Requires-Dist: datasets<=3.4.1,>=3.2.0; extra == "ml"
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  Provides-Extra: drugbank
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  Requires-Dist: rdkit==2023.3.3; extra == "drugbank"
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  Requires-Dist: xmlschema==3.4.2; extra == "drugbank"
@@ -55,5 +54,5 @@ Provides-Extra: utils
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  Requires-Dist: python-stopwatch==1.1.11; extra == "utils"
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  Requires-Dist: importlib-resources<=6.5.2,>=6.4.5; extra == "utils"
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  Requires-Dist: lxml>=5.3.0; extra == "utils"
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- Requires-Dist: pyarrow==18.1.0; extra == "utils"
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+ Requires-Dist: pyarrow<=18.0.1,>=18.0.0; extra == "utils"
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  Requires-Dist: pycryptodomex==3.22.0; extra == "utils"
@@ -6,7 +6,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "ddi_fw"
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- version = "0.0.166"
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+ version = "0.0.168"
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  description = "Do not use :)"
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  readme = "README.md"
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  authors = [
@@ -58,27 +58,26 @@ dependencies = [
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  [project.optional-dependencies]
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  llm = [
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  "sentence-transformers>=3.0.1,<4.0.0",
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- "transformers>=4.42.4,<4.50.0",
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+ "transformers>=4.42.4,<=4.50.0",
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  "stanza>=1.9.2,<=1.10.1",
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  "tokenizers>=0.19.1",
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  "openai>=1.52.2",
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  "langchain>=0.3.4",
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- "langchain_community==0.3.3",
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+ "langchain_community>0.3.16",
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  "chromadb>=0.5.15",
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- "nltk>=3.8.1",
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- "unstructured==0.16.3"
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+ "nltk>=3.8.1"
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  ]
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  ml = [
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- "scikit-learn==1.5.2",
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- "tensorflow>=2.17.0,<2.18.0",
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- "tf-keras==2.17.0",
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+ "scikit-learn>=1.5.2,<=1.6.1",
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+ "tensorflow>=2.17.0,<=2.18.0",
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+ "tf-keras>=2.17.0,<2.18.0",
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  "mlflow>=2.16.1,<=2.20.0",
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  "accelerate>=0.33.0",
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- "scipy==1.13.1",
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+ "scipy>=1.13.1,<=1.14.1",
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  "plotly==5.24.1",
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- "matplotlib==3.8.0",
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- "datasets==3.0.2"
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+ "matplotlib>=3.8.0,<=3.10.0",
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+ "datasets>=3.2.0,<=3.4.1"
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  ]
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@@ -86,13 +85,12 @@ drugbank = [
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  "rdkit==2023.3.3",
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  "xmlschema==3.4.2"
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  ]
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-
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  utils = [
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  "python-stopwatch==1.1.11",
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  "importlib-resources>=6.4.5,<=6.5.2",
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  "lxml>=5.3.0",
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- "pyarrow==18.1.0",
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+ "pyarrow>=18.0.0,<=18.0.1",
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  "pycryptodomex==3.22.0"
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  ]
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@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: ddi_fw
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- Version: 0.0.166
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+ Version: 0.0.168
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  Summary: Do not use :)
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  Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
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  Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
@@ -29,25 +29,24 @@ Requires-Dist: py7zr==0.22.0
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  Requires-Dist: xmlschema==3.4.2
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  Provides-Extra: llm
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  Requires-Dist: sentence-transformers<4.0.0,>=3.0.1; extra == "llm"
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- Requires-Dist: transformers<4.50.0,>=4.42.4; extra == "llm"
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+ Requires-Dist: transformers<=4.50.0,>=4.42.4; extra == "llm"
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  Requires-Dist: stanza<=1.10.1,>=1.9.2; extra == "llm"
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  Requires-Dist: tokenizers>=0.19.1; extra == "llm"
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  Requires-Dist: openai>=1.52.2; extra == "llm"
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  Requires-Dist: langchain>=0.3.4; extra == "llm"
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- Requires-Dist: langchain_community==0.3.3; extra == "llm"
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+ Requires-Dist: langchain_community>0.3.16; extra == "llm"
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  Requires-Dist: chromadb>=0.5.15; extra == "llm"
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  Requires-Dist: nltk>=3.8.1; extra == "llm"
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- Requires-Dist: unstructured==0.16.3; extra == "llm"
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  Provides-Extra: ml
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- Requires-Dist: scikit-learn==1.5.2; extra == "ml"
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- Requires-Dist: tensorflow<2.18.0,>=2.17.0; extra == "ml"
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- Requires-Dist: tf-keras==2.17.0; extra == "ml"
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+ Requires-Dist: scikit-learn<=1.6.1,>=1.5.2; extra == "ml"
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+ Requires-Dist: tensorflow<=2.18.0,>=2.17.0; extra == "ml"
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+ Requires-Dist: tf-keras<2.18.0,>=2.17.0; extra == "ml"
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  Requires-Dist: mlflow<=2.20.0,>=2.16.1; extra == "ml"
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  Requires-Dist: accelerate>=0.33.0; extra == "ml"
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- Requires-Dist: scipy==1.13.1; extra == "ml"
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+ Requires-Dist: scipy<=1.14.1,>=1.13.1; extra == "ml"
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  Requires-Dist: plotly==5.24.1; extra == "ml"
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- Requires-Dist: matplotlib==3.8.0; extra == "ml"
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- Requires-Dist: datasets==3.0.2; extra == "ml"
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+ Requires-Dist: matplotlib<=3.10.0,>=3.8.0; extra == "ml"
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+ Requires-Dist: datasets<=3.4.1,>=3.2.0; extra == "ml"
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  Provides-Extra: drugbank
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  Requires-Dist: rdkit==2023.3.3; extra == "drugbank"
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  Requires-Dist: xmlschema==3.4.2; extra == "drugbank"
@@ -55,5 +54,5 @@ Provides-Extra: utils
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  Requires-Dist: python-stopwatch==1.1.11; extra == "utils"
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  Requires-Dist: importlib-resources<=6.5.2,>=6.4.5; extra == "utils"
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  Requires-Dist: lxml>=5.3.0; extra == "utils"
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- Requires-Dist: pyarrow==18.1.0; extra == "utils"
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+ Requires-Dist: pyarrow<=18.0.1,>=18.0.0; extra == "utils"
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  Requires-Dist: pycryptodomex==3.22.0; extra == "utils"
@@ -11,30 +11,29 @@ xmlschema==3.4.2
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  [llm]
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  sentence-transformers<4.0.0,>=3.0.1
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- transformers<4.50.0,>=4.42.4
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+ transformers<=4.50.0,>=4.42.4
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  stanza<=1.10.1,>=1.9.2
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  tokenizers>=0.19.1
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  openai>=1.52.2
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  langchain>=0.3.4
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- langchain_community==0.3.3
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+ langchain_community>0.3.16
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  chromadb>=0.5.15
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  nltk>=3.8.1
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- unstructured==0.16.3
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  [ml]
25
- scikit-learn==1.5.2
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- tensorflow<2.18.0,>=2.17.0
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- tf-keras==2.17.0
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+ scikit-learn<=1.6.1,>=1.5.2
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+ tensorflow<=2.18.0,>=2.17.0
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+ tf-keras<2.18.0,>=2.17.0
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  mlflow<=2.20.0,>=2.16.1
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  accelerate>=0.33.0
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- scipy==1.13.1
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+ scipy<=1.14.1,>=1.13.1
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  plotly==5.24.1
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- matplotlib==3.8.0
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- datasets==3.0.2
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+ matplotlib<=3.10.0,>=3.8.0
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+ datasets<=3.4.1,>=3.2.0
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35
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  [utils]
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  python-stopwatch==1.1.11
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  importlib-resources<=6.5.2,>=6.4.5
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  lxml>=5.3.0
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- pyarrow==18.1.0
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+ pyarrow<=18.0.1,>=18.0.0
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  pycryptodomex==3.22.0
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