ddi-fw 0.0.160__tar.gz → 0.0.162__tar.gz

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Files changed (108) hide show
  1. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/PKG-INFO +6 -6
  2. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/pyproject.toml +6 -6
  3. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl_text/base.py +1 -1
  4. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw.egg-info/PKG-INFO +6 -6
  5. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw.egg-info/requires.txt +5 -5
  6. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/README.md +0 -0
  7. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/setup.cfg +0 -0
  8. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/__init__.py +0 -0
  9. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/core.py +0 -0
  10. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/dataset_splitter.py +0 -0
  11. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/db_utils.py +0 -0
  12. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/base.py +0 -0
  13. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/data/event.db +0 -0
  14. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/debug.log +0 -0
  15. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/indexes/test_indexes.txt +0 -0
  16. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_0.txt +0 -0
  17. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_1.txt +0 -0
  18. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_2.txt +0 -0
  19. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_3.txt +0 -0
  20. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_4.txt +0 -0
  21. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/indexes/train_indexes.txt +0 -0
  22. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_0.txt +0 -0
  23. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_1.txt +0 -0
  24. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_2.txt +0 -0
  25. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_3.txt +0 -0
  26. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_4.txt +0 -0
  27. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/indexes_old/test_indexes.txt +0 -0
  28. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_0.txt +0 -0
  29. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_1.txt +0 -0
  30. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_2.txt +0 -0
  31. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_3.txt +0 -0
  32. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_4.txt +0 -0
  33. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_indexes.txt +0 -0
  34. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_0.txt +0 -0
  35. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_1.txt +0 -0
  36. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_2.txt +0 -0
  37. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_3.txt +0 -0
  38. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_4.txt +0 -0
  39. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl/readme.md +0 -0
  40. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl_text/data/event.db +0 -0
  41. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl_text/indexes/test_indexes.txt +0 -0
  42. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_0.txt +0 -0
  43. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_1.txt +0 -0
  44. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_2.txt +0 -0
  45. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_3.txt +0 -0
  46. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_4.txt +0 -0
  47. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_indexes.txt +0 -0
  48. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_0.txt +0 -0
  49. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_1.txt +0 -0
  50. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_2.txt +0 -0
  51. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_3.txt +0 -0
  52. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_4.txt +0 -0
  53. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/mdf_sa_ddi/__init__.py +0 -0
  54. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/mdf_sa_ddi/base.py +0 -0
  55. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/mdf_sa_ddi/df_extraction_cleanxiaoyu50.csv +0 -0
  56. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/mdf_sa_ddi/drug_information_del_noDDIxiaoyu50.csv +0 -0
  57. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/test_indexes.txt +0 -0
  58. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_0.txt +0 -0
  59. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_1.txt +0 -0
  60. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_2.txt +0 -0
  61. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_3.txt +0 -0
  62. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_4.txt +0 -0
  63. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_indexes.txt +0 -0
  64. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_0.txt +0 -0
  65. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_1.txt +0 -0
  66. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_2.txt +0 -0
  67. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_3.txt +0 -0
  68. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_4.txt +0 -0
  69. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/mdf_sa_ddi/mdf-sa-ddi.zip +0 -0
  70. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/setup_._py +0 -0
  71. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/drugbank/__init__.py +0 -0
  72. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/drugbank/drugbank.xsd +0 -0
  73. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/drugbank/drugbank_parser.py +0 -0
  74. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/drugbank/drugbank_processor.py +0 -0
  75. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/drugbank/drugbank_processor_org.py +0 -0
  76. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/drugbank/event_extractor.py +0 -0
  77. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/langchain/__init__.py +0 -0
  78. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/langchain/embeddings.py +0 -0
  79. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/langchain/sentence_splitter.py +0 -0
  80. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/langchain/storage.py +0 -0
  81. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/ml/__init__.py +0 -0
  82. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/ml/evaluation_helper.py +0 -0
  83. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/ml/ml_helper.py +0 -0
  84. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/ml/model_wrapper.py +0 -0
  85. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/ml/pytorch_wrapper.py +0 -0
  86. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/ml/tensorflow_wrapper.py +0 -0
  87. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/ner/__init__.py +0 -0
  88. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/ner/mmlrestclient.py +0 -0
  89. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/ner/ner.py +0 -0
  90. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/pipeline/__init__.py +0 -0
  91. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/pipeline/multi_modal_combination_strategy.py +0 -0
  92. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/pipeline/multi_pipeline.py +0 -0
  93. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/pipeline/ner_pipeline.py +0 -0
  94. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/pipeline/pipeline.py +0 -0
  95. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/utils/__init__.py +0 -0
  96. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/utils/enums.py +0 -0
  97. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/utils/json_helper.py +0 -0
  98. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/utils/kaggle.py +0 -0
  99. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/utils/package_helper.py +0 -0
  100. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/utils/py7zr_helper.py +0 -0
  101. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/utils/utils.py +0 -0
  102. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/utils/zip_helper.py +0 -0
  103. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/vectorization/__init__.py +0 -0
  104. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/vectorization/feature_vector_generation.py +0 -0
  105. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/vectorization/idf_helper.py +0 -0
  106. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw.egg-info/SOURCES.txt +0 -0
  107. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw.egg-info/dependency_links.txt +0 -0
  108. {ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw.egg-info/top_level.txt +0 -0
{ddi_fw-0.0.160 → ddi_fw-0.0.162}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: ddi_fw
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- Version: 0.0.160
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+ Version: 0.0.162
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  Summary: Do not use :)
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  Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
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  Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
@@ -23,8 +23,8 @@ Requires-Python: >=3.10
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  Description-Content-Type: text/markdown
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  Requires-Dist: pydantic==2.10.6
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  Requires-Dist: tqdm>=4.66.6
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- Requires-Dist: pandas>=2.2.0
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- Requires-Dist: numpy<=2.1.1,>=1.26.4
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+ Requires-Dist: pandas==2.2.2
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+ Requires-Dist: numpy==2.0.2
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  Requires-Dist: py7zr==0.22.0
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  Provides-Extra: llm
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  Requires-Dist: sentence-transformers<=3.3.1,>=3.0.1; extra == "llm"
@@ -61,7 +61,7 @@ Requires-Dist: sentence-transformers<=3.3.1,>=3.0.1; extra == "pipeline-and-ner"
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  Requires-Dist: mlflow==2.16.1; extra == "pipeline-and-ner"
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  Provides-Extra: utils
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  Requires-Dist: python-stopwatch==1.1.11; extra == "utils"
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- Requires-Dist: importlib-resources==6.4.5; extra == "utils"
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- Requires-Dist: lxml==5.3.0; extra == "utils"
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- Requires-Dist: pyarrow==17.0.0; extra == "utils"
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+ Requires-Dist: importlib-resources<=6.5.2,>=6.4.5; extra == "utils"
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+ Requires-Dist: lxml>=5.3.0; extra == "utils"
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+ Requires-Dist: pyarrow==18.0.1; extra == "utils"
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  Requires-Dist: pycryptodomex==3.22.0; extra == "utils"
{ddi_fw-0.0.160 → ddi_fw-0.0.162}/pyproject.toml RENAMED
@@ -6,7 +6,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "ddi_fw"
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- version = "0.0.160"
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+ version = "0.0.162"
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  description = "Do not use :)"
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  readme = "README.md"
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  authors = [
@@ -49,8 +49,8 @@ requires-python = ">=3.10"
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  dependencies = [
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  "pydantic==2.10.6"
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  ,"tqdm>=4.66.6"
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- ,"pandas>=2.2.0"
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- ,"numpy>=1.26.4,<=2.1.1"
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+ ,"pandas==2.2.2"
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+ ,"numpy==2.0.2"
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  ,"py7zr==0.22.0"
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  ]
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@@ -101,9 +101,9 @@ pipeline_and_ner = [
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  utils = [
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  "python-stopwatch==1.1.11",
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- "importlib-resources==6.4.5",
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- "lxml==5.3.0",
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- "pyarrow==17.0.0",
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+ "importlib-resources>=6.4.5,<=6.5.2",
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+ "lxml>=5.3.0",
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+ "pyarrow==18.0.1",
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  "pycryptodomex==3.22.0"
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  ]
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{ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/datasets/ddi_mdl_text/base.py RENAMED
@@ -3,7 +3,7 @@ import pathlib
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  import numpy as np
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  import pandas as pd
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- from ddi_fw.datasets.feature_vector_generation import SimilarityMatrixGenerator
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+ from ddi_fw.vectorization import SimilarityMatrixGenerator
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  from ddi_fw.langchain.embeddings import PoolingStrategy
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  from .. import BaseDataset
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  from ..db_utils import create_connection
{ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: ddi_fw
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- Version: 0.0.160
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+ Version: 0.0.162
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  Summary: Do not use :)
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  Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
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  Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
@@ -23,8 +23,8 @@ Requires-Python: >=3.10
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  Description-Content-Type: text/markdown
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  Requires-Dist: pydantic==2.10.6
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  Requires-Dist: tqdm>=4.66.6
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- Requires-Dist: pandas>=2.2.0
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- Requires-Dist: numpy<=2.1.1,>=1.26.4
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+ Requires-Dist: pandas==2.2.2
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+ Requires-Dist: numpy==2.0.2
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  Requires-Dist: py7zr==0.22.0
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  Provides-Extra: llm
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  Requires-Dist: sentence-transformers<=3.3.1,>=3.0.1; extra == "llm"
@@ -61,7 +61,7 @@ Requires-Dist: sentence-transformers<=3.3.1,>=3.0.1; extra == "pipeline-and-ner"
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  Requires-Dist: mlflow==2.16.1; extra == "pipeline-and-ner"
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  Provides-Extra: utils
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  Requires-Dist: python-stopwatch==1.1.11; extra == "utils"
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- Requires-Dist: importlib-resources==6.4.5; extra == "utils"
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- Requires-Dist: lxml==5.3.0; extra == "utils"
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- Requires-Dist: pyarrow==17.0.0; extra == "utils"
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+ Requires-Dist: importlib-resources<=6.5.2,>=6.4.5; extra == "utils"
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+ Requires-Dist: lxml>=5.3.0; extra == "utils"
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+ Requires-Dist: pyarrow==18.0.1; extra == "utils"
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  Requires-Dist: pycryptodomex==3.22.0; extra == "utils"
{ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw.egg-info/requires.txt RENAMED
@@ -1,7 +1,7 @@
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  pydantic==2.10.6
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  tqdm>=4.66.6
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- pandas>=2.2.0
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- numpy<=2.1.1,>=1.26.4
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+ pandas==2.2.2
4
+ numpy==2.0.2
5
5
  py7zr==0.22.0
6
6
 
7
7
  [datasets]
@@ -44,7 +44,7 @@ mlflow==2.16.1
44
44
 
45
45
  [utils]
46
46
  python-stopwatch==1.1.11
47
- importlib-resources==6.4.5
48
- lxml==5.3.0
49
- pyarrow==17.0.0
47
+ importlib-resources<=6.5.2,>=6.4.5
48
+ lxml>=5.3.0
49
+ pyarrow==18.0.1
50
50
  pycryptodomex==3.22.0
{ddi_fw-0.0.160 → ddi_fw-0.0.162}/README.md RENAMED
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{ddi_fw-0.0.160 → ddi_fw-0.0.162}/setup.cfg RENAMED
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{ddi_fw-0.0.160 → ddi_fw-0.0.162}/src/ddi_fw/ner/ner.py RENAMED
File without changes