ddi-fw 0.0.140__tar.gz → 0.0.142__tar.gz

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Files changed (117) hide show
  1. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/PKG-INFO +1 -1
  2. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/pyproject.toml +1 -1
  3. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/ml/ml_helper.py +6 -4
  4. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw.egg-info/PKG-INFO +1 -1
  5. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/README.md +0 -0
  6. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/setup.cfg +0 -0
  7. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/__init__.py +0 -0
  8. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/core.py +0 -0
  9. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/db_utils.py +0 -0
  10. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/base.py +0 -0
  11. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/data/event.db +0 -0
  12. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/indexes/test_indexes.txt +0 -0
  13. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_0.txt +0 -0
  14. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_1.txt +0 -0
  15. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_2.txt +0 -0
  16. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_3.txt +0 -0
  17. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_4.txt +0 -0
  18. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/indexes/train_indexes.txt +0 -0
  19. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_0.txt +0 -0
  20. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_1.txt +0 -0
  21. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_2.txt +0 -0
  22. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_3.txt +0 -0
  23. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_4.txt +0 -0
  24. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/indexes_old/test_indexes.txt +0 -0
  25. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_0.txt +0 -0
  26. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_1.txt +0 -0
  27. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_2.txt +0 -0
  28. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_3.txt +0 -0
  29. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_4.txt +0 -0
  30. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_indexes.txt +0 -0
  31. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_0.txt +0 -0
  32. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_1.txt +0 -0
  33. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_2.txt +0 -0
  34. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_3.txt +0 -0
  35. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_4.txt +0 -0
  36. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl/readme.md +0 -0
  37. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl_text/base.py +0 -0
  38. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl_text/data/event.db +0 -0
  39. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl_text/indexes/test_indexes.txt +0 -0
  40. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_0.txt +0 -0
  41. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_1.txt +0 -0
  42. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_2.txt +0 -0
  43. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_3.txt +0 -0
  44. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_fold_4.txt +0 -0
  45. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl_text/indexes/train_indexes.txt +0 -0
  46. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_0.txt +0 -0
  47. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_1.txt +0 -0
  48. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_2.txt +0 -0
  49. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_3.txt +0 -0
  50. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/ddi_mdl_text/indexes/validation_fold_4.txt +0 -0
  51. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/embedding_generator.py +0 -0
  52. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/feature_vector_generation.py +0 -0
  53. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/idf_helper.py +0 -0
  54. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/mdf_sa_ddi/__init__.py +0 -0
  55. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/mdf_sa_ddi/base.py +0 -0
  56. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/mdf_sa_ddi/df_extraction_cleanxiaoyu50.csv +0 -0
  57. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/mdf_sa_ddi/drug_information_del_noDDIxiaoyu50.csv +0 -0
  58. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/test_indexes.txt +0 -0
  59. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_0.txt +0 -0
  60. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_1.txt +0 -0
  61. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_2.txt +0 -0
  62. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_3.txt +0 -0
  63. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_4.txt +0 -0
  64. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_indexes.txt +0 -0
  65. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_0.txt +0 -0
  66. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_1.txt +0 -0
  67. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_2.txt +0 -0
  68. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_3.txt +0 -0
  69. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_4.txt +0 -0
  70. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/mdf_sa_ddi/mdf-sa-ddi.zip +0 -0
  71. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/datasets/setup_._py +0 -0
  72. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/drugbank/__init__.py +0 -0
  73. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/drugbank/drugbank.xsd +0 -0
  74. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/drugbank/drugbank_parser.py +0 -0
  75. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/drugbank/drugbank_processor.py +0 -0
  76. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/drugbank/drugbank_processor_org.py +0 -0
  77. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/drugbank/event_extractor.py +0 -0
  78. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/langchain/__init__.py +0 -0
  79. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/langchain/embeddings.py +0 -0
  80. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/langchain/sentence_splitter.py +0 -0
  81. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/langchain/storage.py +0 -0
  82. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/ml/__init__.py +0 -0
  83. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/ml/evaluation_helper.py +0 -0
  84. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/ml/model_wrapper.py +0 -0
  85. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/ml/pytorch_wrapper.py +0 -0
  86. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/ml/tensorflow_wrapper.py +0 -0
  87. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/ner/__init__.py +0 -0
  88. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/ner/mmlrestclient.py +0 -0
  89. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/ner/ner.py +0 -0
  90. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/pipeline/__init__.py +0 -0
  91. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/pipeline/multi_modal_combination_strategy.py +0 -0
  92. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/pipeline/multi_pipeline.py +0 -0
  93. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/pipeline/ner_pipeline.py +0 -0
  94. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/pipeline/pipeline.py +0 -0
  95. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/test/__init__.py +0 -0
  96. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/test/basic_test.py +0 -0
  97. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/test/combination_test.py +0 -0
  98. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/test/compress_json_test.py +0 -0
  99. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/test/date_test.py +0 -0
  100. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/test/idf_score.py +0 -0
  101. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/test/jaccard_similarity.py +0 -0
  102. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/test/mlfow_test.py +0 -0
  103. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/test/sklearn-tfidf.py +0 -0
  104. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/test/test.py +0 -0
  105. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/test/torch_cuda_test.py +0 -0
  106. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/test/type_guarding_test.py +0 -0
  107. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/utils/__init__.py +0 -0
  108. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/utils/enums.py +0 -0
  109. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/utils/kaggle.py +0 -0
  110. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/utils/package_helper.py +0 -0
  111. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/utils/py7zr_helper.py +0 -0
  112. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/utils/utils.py +0 -0
  113. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw/utils/zip_helper.py +0 -0
  114. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw.egg-info/SOURCES.txt +0 -0
  115. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw.egg-info/dependency_links.txt +0 -0
  116. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw.egg-info/requires.txt +0 -0
  117. {ddi_fw-0.0.140 → ddi_fw-0.0.142}/src/ddi_fw.egg-info/top_level.txt +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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2
  Name: ddi_fw
3
- Version: 0.0.140
3
+ Version: 0.0.142
4
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  Summary: Do not use :)
5
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  Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
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  Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "ddi_fw"
8
- version = "0.0.140"
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+ version = "0.0.142"
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  description = "Do not use :)"
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  readme = "README.md"
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  authors = [
@@ -68,6 +68,8 @@ class MultiModalRunner:
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  item_dict = {t[0]: t for t in self.items}
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  print("multi_modal")
70
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  print(self.multi_modal)
71
+ print(item_dict.keys())
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+
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  for m in self.multi_modal:
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  name = m.get('name')
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  input_type = m.get('input_type')
@@ -75,8 +77,6 @@ class MultiModalRunner:
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  inputs = m.get('inputs')
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  model_type = get_import(m.get("model_type"))
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  kwargs = m.get('params')
78
- print(f"{name}, {input_type},{input},{inputs},{model_type},{kwargs}")
79
-
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  T = self.__create_model(self.library)
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  single_modal=T(self.date, name, model_type, **kwargs)
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  if input_type == '1D':
@@ -84,14 +84,16 @@ class MultiModalRunner:
84
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  single_modal.set_data(
85
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  self.train_idx_arr, self.val_idx_arr, item[1], item[2], item[3], item[4])
86
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  elif input_type == '2D':
87
+ # check keys
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  filtered_dict = {k: item_dict[k] for k in inputs if k in item_dict}
88
- first_input = next(iter(item_dict.values()))
89
+ print(filtered_dict.keys())
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+ first_input = next(iter(filtered_dict.values()))
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91
  train_data_list = [f[1] for f in filtered_dict.values()]
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  test_data_list = [f[3] for f in filtered_dict.values()]
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  train_data = np.stack(train_data_list, axis=1)
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  test_data = np.stack(test_data_list, axis=1)
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  train_label = first_input[2]
94
- test_label = first_input[2]
96
+ test_label = first_input[4]
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  single_modal.set_data(
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  self.train_idx_arr, self.val_idx_arr, train_data, train_label, test_data, test_label)
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  else:
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: ddi_fw
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- Version: 0.0.140
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+ Version: 0.0.142
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  Summary: Do not use :)
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  Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
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  Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
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