ddi-fw 0.0.13__tar.gz → 0.0.14__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (90) hide show
  1. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/PKG-INFO +2 -1
  2. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/pyproject.toml +3 -2
  3. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/drugbank/drugbank_parser.py +6 -2
  4. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw.egg-info/PKG-INFO +2 -1
  5. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw.egg-info/requires.txt +1 -0
  6. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/README.md +0 -0
  7. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/setup.cfg +0 -0
  8. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/__init__.py +0 -0
  9. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/core.py +0 -0
  10. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/db_utils.py +0 -0
  11. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/base.py +0 -0
  12. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/data/event.db +0 -0
  13. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/indexes/test_indexes.txt +0 -0
  14. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_0.txt +0 -0
  15. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_1.txt +0 -0
  16. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_2.txt +0 -0
  17. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_3.txt +0 -0
  18. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/indexes/train_fold_4.txt +0 -0
  19. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/indexes/train_indexes.txt +0 -0
  20. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_0.txt +0 -0
  21. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_1.txt +0 -0
  22. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_2.txt +0 -0
  23. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_3.txt +0 -0
  24. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/indexes/validation_fold_4.txt +0 -0
  25. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/indexes_old/test_indexes.txt +0 -0
  26. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_0.txt +0 -0
  27. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_1.txt +0 -0
  28. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_2.txt +0 -0
  29. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_3.txt +0 -0
  30. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_fold_4.txt +0 -0
  31. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/indexes_old/train_indexes.txt +0 -0
  32. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_0.txt +0 -0
  33. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_1.txt +0 -0
  34. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_2.txt +0 -0
  35. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_3.txt +0 -0
  36. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/indexes_old/validation_fold_4.txt +0 -0
  37. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/ddi_mdl/readme.md +0 -0
  38. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/embedding_generator.py +0 -0
  39. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/embedding_generator_new.py +0 -0
  40. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/feature_vector_generation.py +0 -0
  41. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/idf_helper.py +0 -0
  42. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/mdf_sa_ddi/__init__.py +0 -0
  43. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/mdf_sa_ddi/base.py +0 -0
  44. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/mdf_sa_ddi/df_extraction_cleanxiaoyu50.csv +0 -0
  45. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/mdf_sa_ddi/drug_information_del_noDDIxiaoyu50.csv +0 -0
  46. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/test_indexes.txt +0 -0
  47. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_0.txt +0 -0
  48. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_1.txt +0 -0
  49. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_2.txt +0 -0
  50. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_3.txt +0 -0
  51. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_fold_4.txt +0 -0
  52. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/train_indexes.txt +0 -0
  53. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_0.txt +0 -0
  54. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_1.txt +0 -0
  55. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_2.txt +0 -0
  56. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_3.txt +0 -0
  57. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/mdf_sa_ddi/indexes/validation_fold_4.txt +0 -0
  58. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/mdf_sa_ddi/mdf-sa-ddi.zip +0 -0
  59. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/datasets/setup_._py +0 -0
  60. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/drugbank/__init__.py +0 -0
  61. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/drugbank/drugbank.xsd +0 -0
  62. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/drugbank/drugbank_processor.py +0 -0
  63. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/drugbank/drugbank_processor_org.py +0 -0
  64. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/drugbank/event_extractor.py +0 -0
  65. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/experiments/__init__.py +0 -0
  66. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/experiments/custom_torch_model.py +0 -0
  67. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/experiments/evaluation_helper.py +0 -0
  68. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/experiments/tensorflow_helper.py +0 -0
  69. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/experiments/test.py +0 -0
  70. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/ner/__init__.py +0 -0
  71. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/ner/mmlrestclient.py +0 -0
  72. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/ner/ner.py +0 -0
  73. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/test/basic_test.py +0 -0
  74. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/test/combination_test.py +0 -0
  75. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/test/compress_json_test.py +0 -0
  76. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/test/date_test.py +0 -0
  77. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/test/idf_score.py +0 -0
  78. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/test/jaccard_similarity.py +0 -0
  79. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/test/mlfow_test.py +0 -0
  80. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/test/sklearn-tfidf.py +0 -0
  81. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/test/test.py +0 -0
  82. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/test/torch_cuda_test.py +0 -0
  83. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/test/type_guarding_test.py +0 -0
  84. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/utils/__init__.py +0 -0
  85. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/utils/enums.py +0 -0
  86. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/utils/utils.py +0 -0
  87. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/utils/zip_helper.py +0 -0
  88. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw.egg-info/SOURCES.txt +0 -0
  89. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw.egg-info/dependency_links.txt +0 -0
  90. {ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw.egg-info/top_level.txt +0 -0
{ddi_fw-0.0.13 → ddi_fw-0.0.14}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: ddi_fw
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- Version: 0.0.13
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+ Version: 0.0.14
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  Summary: Do not use :)
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  Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
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  Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
@@ -22,6 +22,7 @@ Classifier: Topic :: Scientific/Engineering :: Information Analysis
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  Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
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  Requires-Python: >=3.8
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  Description-Content-Type: text/markdown
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+ Requires-Dist: importlib-resources
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  Requires-Dist: lxml
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  Requires-Dist: matplotlib
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  Requires-Dist: mlflow==2.7.1
{ddi_fw-0.0.13 → ddi_fw-0.0.14}/pyproject.toml RENAMED
@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "ddi_fw"
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- version = "0.0.13"
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+ version = "0.0.14"
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  description = "Do not use :)"
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  readme = "README.md"
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  authors = [
@@ -45,7 +45,8 @@ license = { file = "LICENSE" }
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  requires-python = ">=3.8"
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  dependencies = [
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- "lxml"
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+ "importlib-resources"
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+ ,"lxml"
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  ,"matplotlib"
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  ,"mlflow==2.7.1"
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  ,"nltk"
{ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/drugbank/drugbank_parser.py RENAMED
@@ -11,7 +11,7 @@ import json as json
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  import sys
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  import unicodedata
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  import re
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-
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+ from importlib import resources as impresources
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  from ddi_fw.utils import ZipHelper
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@@ -72,7 +72,7 @@ class DrugBankParser:
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  # HERE = '/content/drive/My Drive/drugbank'
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  HERE = input_path
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  xsd_file='drugbank.xsd'
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- DRUGBANK_XSD = xsd_file
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+ DRUGBANK_XSD = open(impresources.files(xsd_file))
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  # DRUGBANK_XSD = HERE + '/' + xsd_file
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  DRUGBANK_ZIP = HERE + '/' + zip_file
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  xsd = xmlschema.XMLSchema(DRUGBANK_XSD)
@@ -154,3 +154,7 @@ class DrugBankParser:
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  zip_helper = ZipHelper()
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  zip_helper.zip(zip_prefix='drugs', input_path=input_path,
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  output_path=output_path, chunk_size=chunk_size)
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+
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+ if __name__ == "__main__":
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+ DrugBankParser()
{ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: ddi_fw
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- Version: 0.0.13
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+ Version: 0.0.14
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  Summary: Do not use :)
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  Author-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
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  Maintainer-email: Kıvanç Bayraktar <bayraktarkivanc@gmail.com>
@@ -22,6 +22,7 @@ Classifier: Topic :: Scientific/Engineering :: Information Analysis
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  Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
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  Requires-Python: >=3.8
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  Description-Content-Type: text/markdown
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+ Requires-Dist: importlib-resources
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  Requires-Dist: lxml
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  Requires-Dist: matplotlib
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  Requires-Dist: mlflow==2.7.1
{ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw.egg-info/requires.txt RENAMED
@@ -1,3 +1,4 @@
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+ importlib-resources
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  lxml
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  matplotlib
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  mlflow==2.7.1
{ddi_fw-0.0.13 → ddi_fw-0.0.14}/README.md RENAMED
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{ddi_fw-0.0.13 → ddi_fw-0.0.14}/setup.cfg RENAMED
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{ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/ner/ner.py RENAMED
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{ddi_fw-0.0.13 → ddi_fw-0.0.14}/src/ddi_fw/test/test.py RENAMED
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