dcnum 0.25.5__tar.gz → 0.25.6__tar.gz

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Files changed (126) hide show
  1. {dcnum-0.25.5 → dcnum-0.25.6}/.github/workflows/check.yml +1 -0
  2. {dcnum-0.25.5 → dcnum-0.25.6}/.readthedocs.yml +2 -0
  3. {dcnum-0.25.5 → dcnum-0.25.6}/CHANGELOG +2 -0
  4. {dcnum-0.25.5 → dcnum-0.25.6}/PKG-INFO +1 -1
  5. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/_version.py +9 -4
  6. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum.egg-info/PKG-INFO +1 -1
  7. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_read_hdf5.py +1 -1
  8. {dcnum-0.25.5 → dcnum-0.25.6}/.github/workflows/deploy_pypi.yml +0 -0
  9. {dcnum-0.25.5 → dcnum-0.25.6}/.gitignore +0 -0
  10. {dcnum-0.25.5 → dcnum-0.25.6}/LICENSE +0 -0
  11. {dcnum-0.25.5 → dcnum-0.25.6}/README.rst +0 -0
  12. {dcnum-0.25.5 → dcnum-0.25.6}/benchmark/.gitignore +0 -0
  13. {dcnum-0.25.5 → dcnum-0.25.6}/benchmark/Readme.md +0 -0
  14. {dcnum-0.25.5 → dcnum-0.25.6}/benchmark/benchmark.py +0 -0
  15. {dcnum-0.25.5 → dcnum-0.25.6}/benchmark/bm_write_deque_writer_thread.py +0 -0
  16. {dcnum-0.25.5 → dcnum-0.25.6}/benchmark/bm_write_queue_collector_thread.py +0 -0
  17. {dcnum-0.25.5 → dcnum-0.25.6}/docs/conf.py +0 -0
  18. {dcnum-0.25.5 → dcnum-0.25.6}/docs/extensions/github_changelog.py +0 -0
  19. {dcnum-0.25.5 → dcnum-0.25.6}/docs/index.rst +0 -0
  20. {dcnum-0.25.5 → dcnum-0.25.6}/docs/requirements.txt +0 -0
  21. {dcnum-0.25.5 → dcnum-0.25.6}/pyproject.toml +0 -0
  22. {dcnum-0.25.5 → dcnum-0.25.6}/setup.cfg +0 -0
  23. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/__init__.py +0 -0
  24. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/feat/__init__.py +0 -0
  25. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/feat/event_extractor_manager_thread.py +0 -0
  26. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/feat/feat_background/__init__.py +0 -0
  27. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/feat/feat_background/base.py +0 -0
  28. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/feat/feat_background/bg_copy.py +0 -0
  29. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/feat/feat_background/bg_roll_median.py +0 -0
  30. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/feat/feat_background/bg_sparse_median.py +0 -0
  31. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/feat/feat_brightness/__init__.py +0 -0
  32. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/feat/feat_brightness/bright_all.py +0 -0
  33. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/feat/feat_brightness/common.py +0 -0
  34. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/feat/feat_contour/__init__.py +0 -0
  35. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/feat/feat_contour/contour.py +0 -0
  36. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/feat/feat_contour/moments.py +0 -0
  37. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/feat/feat_contour/volume.py +0 -0
  38. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/feat/feat_texture/__init__.py +0 -0
  39. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/feat/feat_texture/common.py +0 -0
  40. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/feat/feat_texture/tex_all.py +0 -0
  41. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/feat/gate.py +0 -0
  42. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/feat/queue_event_extractor.py +0 -0
  43. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/logic/__init__.py +0 -0
  44. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/logic/ctrl.py +0 -0
  45. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/logic/job.py +0 -0
  46. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/logic/json_encoder.py +0 -0
  47. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/meta/__init__.py +0 -0
  48. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/meta/paths.py +0 -0
  49. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/meta/ppid.py +0 -0
  50. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/os_env_st.py +0 -0
  51. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/read/__init__.py +0 -0
  52. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/read/cache.py +0 -0
  53. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/read/const.py +0 -0
  54. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/read/detect_flicker.py +0 -0
  55. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/read/hdf5_data.py +0 -0
  56. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/read/mapped.py +0 -0
  57. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/segm/__init__.py +0 -0
  58. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/segm/segm_thresh.py +0 -0
  59. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/segm/segm_torch/__init__.py +0 -0
  60. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/segm/segm_torch/segm_torch_base.py +0 -0
  61. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/segm/segm_torch/segm_torch_mpo.py +0 -0
  62. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/segm/segm_torch/segm_torch_sto.py +0 -0
  63. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/segm/segm_torch/torch_model.py +0 -0
  64. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/segm/segm_torch/torch_postproc.py +0 -0
  65. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/segm/segm_torch/torch_preproc.py +0 -0
  66. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/segm/segmenter.py +0 -0
  67. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/segm/segmenter_manager_thread.py +0 -0
  68. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/segm/segmenter_mpo.py +0 -0
  69. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/segm/segmenter_sto.py +0 -0
  70. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/write/__init__.py +0 -0
  71. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/write/deque_writer_thread.py +0 -0
  72. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/write/queue_collector_thread.py +0 -0
  73. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/write/writer.py +0 -0
  74. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum.egg-info/SOURCES.txt +0 -0
  75. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum.egg-info/dependency_links.txt +0 -0
  76. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum.egg-info/requires.txt +0 -0
  77. {dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum.egg-info/top_level.txt +0 -0
  78. {dcnum-0.25.5 → dcnum-0.25.6}/tests/conftest.py +0 -0
  79. {dcnum-0.25.5 → dcnum-0.25.6}/tests/data/fmt-hdf5_cytoshot_extended-moments-features.zip +0 -0
  80. {dcnum-0.25.5 → dcnum-0.25.6}/tests/data/fmt-hdf5_cytoshot_full-features_2023.zip +0 -0
  81. {dcnum-0.25.5 → dcnum-0.25.6}/tests/data/fmt-hdf5_cytoshot_full-features_2024.zip +0 -0
  82. {dcnum-0.25.5 → dcnum-0.25.6}/tests/data/fmt-hdf5_cytoshot_full-features_legacy_allev_2023.zip +0 -0
  83. {dcnum-0.25.5 → dcnum-0.25.6}/tests/data/fmt-hdf5_shapein_empty.zip +0 -0
  84. {dcnum-0.25.5 → dcnum-0.25.6}/tests/data/fmt-hdf5_shapein_raw-with-variable-length-logs.zip +0 -0
  85. {dcnum-0.25.5 → dcnum-0.25.6}/tests/data/segm-torch-model_unet-dcnum-test_g1_910c2.zip +0 -0
  86. {dcnum-0.25.5 → dcnum-0.25.6}/tests/data/segm-torch-test-data_unet-dcnum-test_g1_910c2.zip +0 -0
  87. {dcnum-0.25.5 → dcnum-0.25.6}/tests/helper_methods.py +0 -0
  88. {dcnum-0.25.5 → dcnum-0.25.6}/tests/requirements.txt +0 -0
  89. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_feat_background_base.py +0 -0
  90. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_feat_background_bg_copy.py +0 -0
  91. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_feat_background_bg_roll_median.py +0 -0
  92. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_feat_background_bg_sparsemed.py +0 -0
  93. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_feat_brightness.py +0 -0
  94. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_feat_event_extractor_manager.py +0 -0
  95. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_feat_gate.py +0 -0
  96. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_feat_haralick.py +0 -0
  97. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_feat_moments_based.py +0 -0
  98. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_feat_moments_based_extended.py +0 -0
  99. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_feat_volume.py +0 -0
  100. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_init.py +0 -0
  101. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_logic_job.py +0 -0
  102. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_logic_join.py +0 -0
  103. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_logic_json.py +0 -0
  104. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_logic_pipeline.py +0 -0
  105. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_meta_paths.py +0 -0
  106. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_meta_ppid_base.py +0 -0
  107. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_meta_ppid_bg.py +0 -0
  108. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_meta_ppid_data.py +0 -0
  109. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_meta_ppid_feat.py +0 -0
  110. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_meta_ppid_gate.py +0 -0
  111. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_meta_ppid_segm.py +0 -0
  112. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_read_basin.py +0 -0
  113. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_read_concat_hdf5.py +0 -0
  114. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_read_detect_flicker.py +0 -0
  115. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_read_hdf5_basins.py +0 -0
  116. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_read_hdf5_index_mapping.py +0 -0
  117. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_segm_base.py +0 -0
  118. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_segm_mpo.py +0 -0
  119. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_segm_no_mask_proc.py +0 -0
  120. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_segm_sto.py +0 -0
  121. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_segm_thresh.py +0 -0
  122. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_segm_torch.py +0 -0
  123. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_segm_torch_preproc.py +0 -0
  124. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_write_deque_writer_thread.py +0 -0
  125. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_write_queue_collector_thread.py +0 -0
  126. {dcnum-0.25.5 → dcnum-0.25.6}/tests/test_write_writer.py +0 -0
{dcnum-0.25.5 → dcnum-0.25.6}/.github/workflows/check.yml RENAMED
@@ -12,6 +12,7 @@ jobs:
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  matrix:
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  python-version: ['3.10', '3.x']
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  os: [macos-latest, ubuntu-latest, windows-latest]
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+ fail-fast: false
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  timeout-minutes: 30
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  steps:
{dcnum-0.25.5 → dcnum-0.25.6}/.readthedocs.yml RENAMED
@@ -5,6 +5,8 @@ build:
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  os: ubuntu-22.04
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  tools:
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  python: "3.11"
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+ sphinx:
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+ configuration: docs/conf.py
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  python:
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  install:
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  - requirements: docs/requirements.txt
{dcnum-0.25.5 → dcnum-0.25.6}/CHANGELOG RENAMED
@@ -1,3 +1,5 @@
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+ 0.25.6
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+ - maintenance release
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  0.25.5
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  - enh: support unnamed table data in `HDF5Data`
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  - setup: pin scipy<1.15 due to https://github.com/scipy/scipy/issues/22333
{dcnum-0.25.5 → dcnum-0.25.6}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.2
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  Name: dcnum
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- Version: 0.25.5
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+ Version: 0.25.6
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  Summary: numerics toolbox for imaging deformability cytometry
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  Author: Maximilian Schlögel, Paul Müller, Raghava Alajangi
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  Maintainer-email: Paul Müller <dev@craban.de>
{dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum/_version.py RENAMED
@@ -1,8 +1,13 @@
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- # file generated by setuptools_scm
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+ # file generated by setuptools-scm
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  # don't change, don't track in version control
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+
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+ __all__ = ["__version__", "__version_tuple__", "version", "version_tuple"]
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+
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  TYPE_CHECKING = False
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  if TYPE_CHECKING:
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- from typing import Tuple, Union
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+ from typing import Tuple
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+ from typing import Union
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+
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  VERSION_TUPLE = Tuple[Union[int, str], ...]
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  else:
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  VERSION_TUPLE = object
@@ -12,5 +17,5 @@ __version__: str
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  __version_tuple__: VERSION_TUPLE
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  version_tuple: VERSION_TUPLE
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- __version__ = version = '0.25.5'
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- __version_tuple__ = version_tuple = (0, 25, 5)
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+ __version__ = version = '0.25.6'
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+ __version_tuple__ = version_tuple = (0, 25, 6)
{dcnum-0.25.5 → dcnum-0.25.6}/src/dcnum.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.2
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  Name: dcnum
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- Version: 0.25.5
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+ Version: 0.25.6
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  Summary: numerics toolbox for imaging deformability cytometry
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  Author: Maximilian Schlögel, Paul Müller, Raghava Alajangi
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  Maintainer-email: Paul Müller <dev@craban.de>
{dcnum-0.25.5 → dcnum-0.25.6}/tests/test_read_hdf5.py RENAMED
@@ -311,7 +311,7 @@ def test_pickling_state_tables_unnamed():
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  "fmt-hdf5_cytoshot_full-features_legacy_allev_2023.zip")
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  # The original file does not contain any tables, so we write
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  # generate a table
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- tab_data = np.random.random((400,200))
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+ tab_data = np.random.random((400, 200))
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  # add table to source file
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  with h5py.File(path, "a") as h5:
{dcnum-0.25.5 → dcnum-0.25.6}/.gitignore RENAMED
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