dcnum 0.25.3__tar.gz → 0.25.4__tar.gz

{dcnum-0.25.3 → dcnum-0.25.4}/CHANGELOG

@@ -1,3 +1,5 @@
+0.25.4
+ - enh: support passing a single file to `concatenated_hdf5_data`
 0.25.3
  - enh: request single threaded operations when going into mp.Process (#17)
  - enh: new module `dcnum.single_thread_osenv`

{dcnum-0.25.3 → dcnum-0.25.4}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dcnum
-Version: 0.25.3
+Version: 0.25.4
 Summary: numerics toolbox for imaging deformability cytometry
 Author: Maximilian Schlögel, Paul Müller, Raghava Alajangi
 Maintainer-email: Paul Müller <dev@craban.de>

{dcnum-0.25.3 → dcnum-0.25.4}/src/dcnum/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.25.3'
-__version_tuple__ = version_tuple = (0, 25, 3)
+__version__ = version = '0.25.4'
+__version_tuple__ = version_tuple = (0, 25, 4)

{dcnum-0.25.3 → dcnum-0.25.4}/src/dcnum/read/hdf5_data.py

@@ -593,8 +593,11 @@ def concatenated_hdf5_data(paths: List[pathlib.Path],
         raise ValueError(
             f"Invalid type for `path_out`: {type(path_out)} ({path_out}")
 
-    if len(paths) <= 1:
-        raise ValueError("Please specify at least two files in `paths`!")
+    if len(paths) == 0:
+        raise ValueError("Please specify at least one file in `paths`!")
+    elif len(paths) == 1:
+        warnings.warn("Only one file passed to `concatenated_hdf5_data`; this "
+                      "is equivalent to using `HDF5Data`, but slower.")
 
     frames = []
 

{dcnum-0.25.3 → dcnum-0.25.4}/src/dcnum.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dcnum
-Version: 0.25.3
+Version: 0.25.4
 Summary: numerics toolbox for imaging deformability cytometry
 Author: Maximilian Schlögel, Paul Müller, Raghava Alajangi
 Maintainer-email: Paul Müller <dev@craban.de>

{dcnum-0.25.3 → dcnum-0.25.4}/tests/test_read_concat_hdf5.py

@@ -89,9 +89,15 @@ def test_concat_invalid_input_path():
 
 
 def test_concat_invalid_input_path_number():
+    with pytest.raises(ValueError, match="Please specify at least one"):
+        read.concatenated_hdf5_data([])
+
+
+def test_concat_invalid_input_path_number_warn():
     path = retrieve_data("fmt-hdf5_cytoshot_full-features_2023.zip")
-    with pytest.raises(ValueError, match="Please specify at least two"):
-        read.concatenated_hdf5_data([path])
+    with pytest.warns(UserWarning, match="is equivalent to using"):
+        hd = read.concatenated_hdf5_data([path])
+        assert len(hd) == 40
 
 
 def test_concat_specify_input_feature_number():