dcnum 0.11.3__tar.gz → 0.11.5__tar.gz

{dcnum-0.11.3 → dcnum-0.11.5}/.github/workflows/deploy_pypi.yml

@@ -26,7 +26,7 @@ jobs:
           twine upload --skip-existing dist/*
 
   build_wheels:
-    name: Build source distribution
+    name: Build wheel
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v3

{dcnum-0.11.3 → dcnum-0.11.5}/CHANGELOG

@@ -1,3 +1,7 @@
+0.11.5
+ - setup: fix bad package discovery
+0.11.4
+ - fix: properly handle empty logs
 0.11.3
  - fix: make sure values in tables dictionary are one-dimensional
 0.11.2

{dcnum-0.11.3 → dcnum-0.11.5}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dcnum
-Version: 0.11.3
+Version: 0.11.5
 Summary: numerics toolbox for imaging deformability cytometry
 Author: Paul Müller
 Maintainer-email: Paul Müller <dev@craban.de>

{dcnum-0.11.3 → dcnum-0.11.5}/dcnum/_version.py

@@ -1,4 +1,4 @@
 # file generated by setuptools_scm
 # don't change, don't track in version control
-__version__ = version = '0.11.3'
-__version_tuple__ = version_tuple = (0, 11, 3)
+__version__ = version = '0.11.5'
+__version_tuple__ = version_tuple = (0, 11, 5)

{dcnum-0.11.3 → dcnum-0.11.5}/dcnum/read/hdf5_data.py

@@ -111,9 +111,10 @@ class HDF5Data:
                         self.meta[key] = self.meta[key].decode("utf-8")
                 for key in h5.get("logs", []):
                     alog = list(h5["logs"][key])
-                    if isinstance(alog[0], bytes):
-                        alog = [ll.decode("utf") for ll in alog]
-                    self.logs[key] = alog
+                    if alog:
+                        if isinstance(alog[0], bytes):
+                            alog = [ll.decode("utf") for ll in alog]
+                        self.logs[key] = alog
                 for tab in h5.get("tables", []):
                     tabdict = {}
                     for tkey in h5["tables"][tab].dtype.fields.keys():

{dcnum-0.11.3 → dcnum-0.11.5}/dcnum/write/queue_collector_thread.py

@@ -188,7 +188,7 @@ class QueueCollectorThread(threading.Thread):
 
             # We have reached the writer threshold. This means the extractor
             # has analyzed at least `write_threshold` frames (not events).
-            self.logger.debug(f"Current frane: {cur_frame}")
+            self.logger.debug(f"Current frame: {cur_frame}")
 
             # Create an event stash
             stash = EventStash(

{dcnum-0.11.3 → dcnum-0.11.5}/dcnum.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: dcnum
-Version: 0.11.3
+Version: 0.11.5
 Summary: numerics toolbox for imaging deformability cytometry
 Author: Paul Müller
 Maintainer-email: Paul Müller <dev@craban.de>

dcnum-0.11.5/dcnum.egg-info/top_level.txt

@@ -0,0 +1 @@
+dcnum

{dcnum-0.11.3 → dcnum-0.11.5}/pyproject.toml

@@ -40,9 +40,6 @@ tracker = "https://github.com/DC-Analysis/dcnum/issues"
 documentation = "https://dcnum.readthedocs.io/en/stable/"
 changelog = "https://dcnum.readthedocs.io/en/stable/sec_changelog.html"
 
-[tool.setuptools.packages]
-find = {}
-
 [tool.setuptools_scm]
 write_to = "dcnum/_version.py"
 version_scheme = "post-release"

{dcnum-0.11.3 → dcnum-0.11.5}/tests/test_read_hdf5.py

@@ -184,3 +184,13 @@ def test_pickling_state_tables():
     for lk in table:
         assert np.allclose(h5d1.tables["sample_table"][lk],
                            h5d2.tables["sample_table"][lk])
+
+
+def test_read_empty_logs():
+    path = retrieve_data(
+        data_path / "fmt-hdf5_cytoshot_full-features_legacy_allev_2023.zip")
+    with h5py.File(path, "a") as h5:
+        h5.require_group("logs").create_dataset(name="empty_log",
+                                                data=[])
+    h5r = read.HDF5Data(path)
+    assert "empty_log" not in h5r.logs

dcnum-0.11.3/dcnum.egg-info/top_level.txt

@@ -1,4 +0,0 @@
-dcnum
-dist
-docs
-tests