dcicutils 8.8.4.1b31__tar.gz → 8.8.4.1b33__tar.gz

Sign up to get free protection for your applications and to get access to all the features.
Files changed (79) hide show
  1. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/PKG-INFO +1 -1
  2. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/file_utils.py +3 -3
  3. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/tmpfile_utils.py +8 -6
  4. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/pyproject.toml +1 -1
  5. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/LICENSE.txt +0 -0
  6. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/README.rst +0 -0
  7. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/__init__.py +0 -0
  8. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/base.py +0 -0
  9. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/beanstalk_utils.py +0 -0
  10. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/bundle_utils.py +0 -0
  11. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/captured_output.py +0 -0
  12. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/cloudformation_utils.py +0 -0
  13. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/codebuild_utils.py +0 -0
  14. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/command_utils.py +0 -0
  15. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/common.py +0 -0
  16. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/contribution_scripts.py +0 -0
  17. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/contribution_utils.py +0 -0
  18. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/creds_utils.py +0 -0
  19. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/data_readers.py +0 -0
  20. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/data_utils.py +0 -0
  21. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/datetime_utils.py +0 -0
  22. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/deployment_utils.py +0 -0
  23. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/diff_utils.py +0 -0
  24. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/docker_utils.py +0 -0
  25. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/ecr_scripts.py +0 -0
  26. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/ecr_utils.py +0 -0
  27. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/ecs_utils.py +0 -0
  28. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/env_base.py +0 -0
  29. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/env_manager.py +0 -0
  30. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/env_scripts.py +0 -0
  31. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/env_utils.py +0 -0
  32. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/env_utils_legacy.py +0 -0
  33. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/es_utils.py +0 -0
  34. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/exceptions.py +0 -0
  35. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/ff_mocks.py +0 -0
  36. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/ff_utils.py +0 -0
  37. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/function_cache_decorator.py +0 -0
  38. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/glacier_utils.py +0 -0
  39. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/http_utils.py +0 -0
  40. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/jh_utils.py +0 -0
  41. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/kibana/dashboards.json +0 -0
  42. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/kibana/readme.md +0 -0
  43. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/lang_utils.py +0 -0
  44. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/license_policies/c4-infrastructure.jsonc +0 -0
  45. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/license_policies/c4-python-infrastructure.jsonc +0 -0
  46. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/license_policies/park-lab-common-server.jsonc +0 -0
  47. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/license_policies/park-lab-common.jsonc +0 -0
  48. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc +0 -0
  49. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/license_policies/park-lab-pipeline.jsonc +0 -0
  50. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/license_utils.py +0 -0
  51. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/log_utils.py +0 -0
  52. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/misc_utils.py +0 -0
  53. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/obfuscation_utils.py +0 -0
  54. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/opensearch_utils.py +0 -0
  55. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/portal_object_utils.py +0 -0
  56. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/portal_utils.py +0 -0
  57. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/progress_bar.py +0 -0
  58. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/project_utils.py +0 -0
  59. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/qa_checkers.py +0 -0
  60. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/qa_utils.py +0 -0
  61. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/redis_tools.py +0 -0
  62. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/redis_utils.py +0 -0
  63. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/s3_utils.py +0 -0
  64. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/schema_utils.py +0 -0
  65. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/scripts/publish_to_pypi.py +0 -0
  66. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/scripts/run_license_checker.py +0 -0
  67. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/scripts/view_portal_object.py +0 -0
  68. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/secrets_utils.py +0 -0
  69. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/sheet_utils.py +0 -0
  70. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/snapshot_utils.py +0 -0
  71. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/ssl_certificate_utils.py +0 -0
  72. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/structured_data.py +0 -0
  73. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/submitr/progress_constants.py +0 -0
  74. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/submitr/ref_lookup_strategy.py +0 -0
  75. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/task_utils.py +0 -0
  76. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/trace_utils.py +0 -0
  77. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/validation_utils.py +0 -0
  78. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/variant_utils.py +0 -0
  79. {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/zip_utils.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: dcicutils
3
- Version: 8.8.4.1b31
3
+ Version: 8.8.4.1b33
4
4
  Summary: Utility package for interacting with the 4DN Data Portal and other 4DN resources
5
5
  Home-page: https://github.com/4dn-dcic/utils
6
6
  License: MIT
@@ -14,7 +14,7 @@ HOME_DIRECTORY = str(pathlib.Path().home())
14
14
 
15
15
 
16
16
  def search_for_file(file: str,
17
- location: Union[str, Optional[List[str]]] = None,
17
+ location: Union[str, pathlib.PosixPath, Optional[List[Union[str, pathlib.PosixPath]]]] = None,
18
18
  recursive: bool = False,
19
19
  single: bool = False,
20
20
  order: bool = True) -> Union[List[str], Optional[str]]:
@@ -35,7 +35,7 @@ def search_for_file(file: str,
35
35
  return None if single is True else []
36
36
  if os.path.isabs(file):
37
37
  if os.path.exists(file):
38
- return file if single is True else [file]
38
+ return str(file) if single is True else [str(file)]
39
39
  return None if single is True else []
40
40
  files_found = []
41
41
  if not location:
@@ -53,7 +53,7 @@ def search_for_file(file: str,
53
53
  if not (directory := directory.strip()):
54
54
  continue
55
55
  if os.path.isfile(directory := os.path.abspath(os.path.normpath(directory))):
56
- # Allow a file; assume its parent directory was intended.
56
+ # Actually, allow a file rather then a directory; assume its parent directory was intended.
57
57
  if not (directory := os.path.dirname(directory)):
58
58
  continue
59
59
  if directory not in location_pruned:
@@ -50,12 +50,6 @@ def remove_temporary_directory(tmp_directory_name: str) -> None:
50
50
  """
51
51
  Removes the given directory, recursively; but ONLY if it is (somewhere) within the system temporary directory.
52
52
  """
53
- def is_temporary_directory(path: str) -> bool:
54
- try:
55
- tmpdir = tempfile.gettempdir()
56
- return os.path.commonpath([path, tmpdir]) == tmpdir and os.path.exists(path) and os.path.isdir(path)
57
- except Exception:
58
- return False
59
53
  if is_temporary_directory(tmp_directory_name): # Guard against errant deletion.
60
54
  shutil.rmtree(tmp_directory_name)
61
55
 
@@ -72,3 +66,11 @@ def remove_temporary_file(tmp_file_name: str) -> bool:
72
66
  return False
73
67
  except Exception:
74
68
  return False
69
+
70
+
71
+ def is_temporary_directory(path: str) -> bool:
72
+ try:
73
+ tmpdir = tempfile.gettempdir()
74
+ return os.path.commonpath([path, tmpdir]) == tmpdir and os.path.exists(path) and os.path.isdir(path)
75
+ except Exception:
76
+ return False
@@ -1,6 +1,6 @@
1
1
  [tool.poetry]
2
2
  name = "dcicutils"
3
- version = "8.8.4.1b31" # TODO: To become 8.8.5
3
+ version = "8.8.4.1b33" # TODO: To become 8.8.5
4
4
  description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources"
5
5
  authors = ["4DN-DCIC Team <support@4dnucleome.org>"]
6
6
  license = "MIT"