dcicutils 8.8.4.1b31__tar.gz → 8.8.4.1b33__tar.gz
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- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/PKG-INFO +1 -1
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/file_utils.py +3 -3
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/tmpfile_utils.py +8 -6
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/pyproject.toml +1 -1
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/LICENSE.txt +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/README.rst +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/__init__.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/base.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/beanstalk_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/bundle_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/captured_output.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/cloudformation_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/codebuild_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/command_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/common.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/contribution_scripts.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/contribution_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/creds_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/data_readers.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/data_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/datetime_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/deployment_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/diff_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/docker_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/ecr_scripts.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/ecr_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/ecs_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/env_base.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/env_manager.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/env_scripts.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/env_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/env_utils_legacy.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/es_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/exceptions.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/ff_mocks.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/ff_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/function_cache_decorator.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/glacier_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/http_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/jh_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/kibana/dashboards.json +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/kibana/readme.md +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/lang_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/license_policies/c4-infrastructure.jsonc +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/license_policies/c4-python-infrastructure.jsonc +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/license_policies/park-lab-common-server.jsonc +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/license_policies/park-lab-common.jsonc +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/license_policies/park-lab-pipeline.jsonc +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/license_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/log_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/misc_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/obfuscation_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/opensearch_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/portal_object_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/portal_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/progress_bar.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/project_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/qa_checkers.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/qa_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/redis_tools.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/redis_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/s3_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/schema_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/scripts/publish_to_pypi.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/scripts/run_license_checker.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/scripts/view_portal_object.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/secrets_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/sheet_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/snapshot_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/ssl_certificate_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/structured_data.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/submitr/progress_constants.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/submitr/ref_lookup_strategy.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/task_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/trace_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/validation_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/variant_utils.py +0 -0
- {dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/zip_utils.py +0 -0
@@ -14,7 +14,7 @@ HOME_DIRECTORY = str(pathlib.Path().home())
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def search_for_file(file: str,
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location: Union[str, Optional[List[str]]] = None,
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location: Union[str, pathlib.PosixPath, Optional[List[Union[str, pathlib.PosixPath]]]] = None,
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recursive: bool = False,
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single: bool = False,
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order: bool = True) -> Union[List[str], Optional[str]]:
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@@ -35,7 +35,7 @@ def search_for_file(file: str,
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return None if single is True else []
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if os.path.isabs(file):
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if os.path.exists(file):
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return file if single is True else [file]
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return str(file) if single is True else [str(file)]
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return None if single is True else []
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files_found = []
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if not location:
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@@ -53,7 +53,7 @@ def search_for_file(file: str,
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if not (directory := directory.strip()):
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continue
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if os.path.isfile(directory := os.path.abspath(os.path.normpath(directory))):
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#
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# Actually, allow a file rather then a directory; assume its parent directory was intended.
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if not (directory := os.path.dirname(directory)):
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continue
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if directory not in location_pruned:
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@@ -50,12 +50,6 @@ def remove_temporary_directory(tmp_directory_name: str) -> None:
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"""
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Removes the given directory, recursively; but ONLY if it is (somewhere) within the system temporary directory.
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"""
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def is_temporary_directory(path: str) -> bool:
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try:
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tmpdir = tempfile.gettempdir()
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return os.path.commonpath([path, tmpdir]) == tmpdir and os.path.exists(path) and os.path.isdir(path)
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except Exception:
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return False
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if is_temporary_directory(tmp_directory_name): # Guard against errant deletion.
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shutil.rmtree(tmp_directory_name)
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@@ -72,3 +66,11 @@ def remove_temporary_file(tmp_file_name: str) -> bool:
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return False
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except Exception:
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return False
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def is_temporary_directory(path: str) -> bool:
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try:
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tmpdir = tempfile.gettempdir()
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return os.path.commonpath([path, tmpdir]) == tmpdir and os.path.exists(path) and os.path.isdir(path)
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except Exception:
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return False
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@@ -1,6 +1,6 @@
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[tool.poetry]
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name = "dcicutils"
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version = "8.8.4.
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version = "8.8.4.1b33" # TODO: To become 8.8.5
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description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources"
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authors = ["4DN-DCIC Team <support@4dnucleome.org>"]
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license = "MIT"
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{dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/license_policies/c4-infrastructure.jsonc
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{dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/license_policies/park-lab-common.jsonc
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{dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc
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{dcicutils-8.8.4.1b31 → dcicutils-8.8.4.1b33}/dcicutils/license_policies/park-lab-pipeline.jsonc
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