dcicutils 8.8.4.1b12__tar.gz → 8.8.4.1b13__tar.gz
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- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/PKG-INFO +1 -1
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/file_utils.py +8 -2
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/tmpfile_utils.py +9 -8
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/pyproject.toml +1 -1
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/LICENSE.txt +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/README.rst +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/__init__.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/base.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/beanstalk_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/bundle_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/captured_output.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/cloudformation_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/codebuild_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/command_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/common.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/contribution_scripts.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/contribution_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/creds_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/data_readers.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/data_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/datetime_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/deployment_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/diff_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/docker_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/ecr_scripts.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/ecr_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/ecs_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/env_base.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/env_manager.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/env_scripts.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/env_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/env_utils_legacy.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/es_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/exceptions.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/ff_mocks.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/ff_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/function_cache_decorator.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/glacier_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/http_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/jh_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/kibana/dashboards.json +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/kibana/readme.md +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/lang_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/license_policies/c4-infrastructure.jsonc +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/license_policies/c4-python-infrastructure.jsonc +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/license_policies/park-lab-common-server.jsonc +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/license_policies/park-lab-common.jsonc +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/license_policies/park-lab-pipeline.jsonc +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/license_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/log_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/misc_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/obfuscation_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/opensearch_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/portal_object_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/portal_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/progress_bar.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/project_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/qa_checkers.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/qa_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/redis_tools.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/redis_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/s3_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/schema_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/scripts/publish_to_pypi.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/scripts/run_license_checker.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/scripts/view_portal_object.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/secrets_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/sheet_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/snapshot_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/ssl_certificate_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/structured_data.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/submitr/progress_constants.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/submitr/ref_lookup_strategy.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/task_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/trace_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/validation_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/variant_utils.py +0 -0
- {dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/zip_utils.py +0 -0
@@ -103,9 +103,15 @@ def are_files_equal(filea: str, fileb: str) -> bool:
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return False
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def create_random_file(file: Optional[str] = None,
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prefix: Optional[str] = None, suffix: Optional[str] = None,
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def create_random_file(file: Optional[str] = None, prefix: Optional[str] = None, suffix: Optional[str] = None,
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nbytes: int = 1024, binary: bool = False, line_length: Optional[int] = None) -> str:
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"""
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Write to the given file (name/path) some random content. If the given file is None then writes
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to a temporary file. In either case, returns the file written to. The of bytes written is 1024
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by default be can be specified with the nbytes argument; default to writing ASCII text but if
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the binary argument is True then writes binary data as well; if not binary the content is in
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lines of 80 characters each; use the line_length argumetn in this case to change the line length.
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"""
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if not isinstance(nbytes, int) or nbytes < 0:
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nbytes = 0
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if not isinstance(file, str) or not file:
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@@ -18,30 +18,31 @@ def temporary_directory() -> str:
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@contextmanager
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def temporary_file(name: Optional[str] = None, suffix: Optional[str] = None,
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def temporary_file(name: Optional[str] = None, prefix: Optional[str] = None, suffix: Optional[str] = None,
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content: Optional[Union[str, bytes, List[str]]] = None) -> str:
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with temporary_directory() as tmp_directory_name:
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tmp_file_name =
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tmp_file_name = f"{prefix or ''}{name or tempfile.mktemp(dir='')}{suffix or ''}"
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tmp_file_path = os.path.join(tmp_directory_name, tmp_file_name)
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with open(tmp_file_path, "wb" if isinstance(content, bytes) else "w") as tmp_file:
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if content is not None:
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tmp_file.write("\n".join(content) if isinstance(content, list) else content)
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yield
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yield tmp_file_path
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def create_temporary_file_name(prefix: Optional[str] = None, suffix: Optional[str] = None) -> str:
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"""
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Generates and returns the full path to file within the system temporary directory.
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"""
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-
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random_string = f"{datetime.utcnow().strftime('%Y%m%d%H%M%S')}{str(uuid()).replace('-', '')}"
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tmp_file_name = f"{prefix or ''}{random_string}{suffix or ''}"
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return os.path.join(tempfile.gettempdir(), tmp_file_name)
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@contextmanager
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def temporary_random_file(prefix: Optional[str] = None, suffix: Optional[str] = None,
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nbytes: int = 1024, binary: bool = False, line_length: Optional[int] = None) -> str:
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with temporary_file() as tmp_file_path:
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create_random_file(tmp_file_path,
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nbytes=nbytes, binary=binary, line_length=line_length)
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with temporary_file(prefix=prefix, suffix=suffix) as tmp_file_path:
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create_random_file(tmp_file_path, nbytes=nbytes, binary=binary, line_length=line_length)
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yield tmp_file_path
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@@ -1,6 +1,6 @@
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[tool.poetry]
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name = "dcicutils"
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version = "8.8.4.
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version = "8.8.4.1b13" # TODO: To become 8.8.5
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description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources"
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authors = ["4DN-DCIC Team <support@4dnucleome.org>"]
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license = "MIT"
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{dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/license_policies/c4-infrastructure.jsonc
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{dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/license_policies/park-lab-common.jsonc
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{dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc
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{dcicutils-8.8.4.1b12 → dcicutils-8.8.4.1b13}/dcicutils/license_policies/park-lab-pipeline.jsonc
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