dcicutils 8.8.3.1b21__tar.gz → 8.8.3.1b24__tar.gz

Sign up to get free protection for your applications and to get access to all the features.
Files changed (78) hide show
  1. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/PKG-INFO +1 -1
  2. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/progress_bar.py +19 -7
  3. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/pyproject.toml +1 -1
  4. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/LICENSE.txt +0 -0
  5. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/README.rst +0 -0
  6. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/__init__.py +0 -0
  7. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/base.py +0 -0
  8. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/beanstalk_utils.py +0 -0
  9. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/bundle_utils.py +0 -0
  10. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/captured_output.py +0 -0
  11. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/cloudformation_utils.py +0 -0
  12. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/codebuild_utils.py +0 -0
  13. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/command_utils.py +0 -0
  14. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/common.py +0 -0
  15. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/contribution_scripts.py +0 -0
  16. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/contribution_utils.py +0 -0
  17. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/creds_utils.py +0 -0
  18. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/data_readers.py +0 -0
  19. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/data_utils.py +0 -0
  20. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/datetime_utils.py +0 -0
  21. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/deployment_utils.py +0 -0
  22. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/diff_utils.py +0 -0
  23. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/docker_utils.py +0 -0
  24. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/ecr_scripts.py +0 -0
  25. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/ecr_utils.py +0 -0
  26. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/ecs_utils.py +0 -0
  27. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/env_base.py +0 -0
  28. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/env_manager.py +0 -0
  29. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/env_scripts.py +0 -0
  30. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/env_utils.py +0 -0
  31. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/env_utils_legacy.py +0 -0
  32. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/es_utils.py +0 -0
  33. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/exceptions.py +0 -0
  34. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/ff_mocks.py +0 -0
  35. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/ff_utils.py +0 -0
  36. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/file_utils.py +0 -0
  37. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/function_cache_decorator.py +0 -0
  38. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/glacier_utils.py +0 -0
  39. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/jh_utils.py +0 -0
  40. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/kibana/dashboards.json +0 -0
  41. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/kibana/readme.md +0 -0
  42. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/lang_utils.py +0 -0
  43. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/license_policies/c4-infrastructure.jsonc +0 -0
  44. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/license_policies/c4-python-infrastructure.jsonc +0 -0
  45. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/license_policies/park-lab-common-server.jsonc +0 -0
  46. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/license_policies/park-lab-common.jsonc +0 -0
  47. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc +0 -0
  48. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/license_policies/park-lab-pipeline.jsonc +0 -0
  49. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/license_utils.py +0 -0
  50. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/log_utils.py +0 -0
  51. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/misc_utils.py +0 -0
  52. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/obfuscation_utils.py +0 -0
  53. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/opensearch_utils.py +0 -0
  54. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/portal_object_utils.py +0 -0
  55. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/portal_utils.py +0 -0
  56. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/project_utils.py +0 -0
  57. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/qa_checkers.py +0 -0
  58. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/qa_utils.py +0 -0
  59. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/redis_tools.py +0 -0
  60. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/redis_utils.py +0 -0
  61. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/s3_utils.py +0 -0
  62. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/schema_utils.py +0 -0
  63. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/scripts/publish_to_pypi.py +0 -0
  64. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/scripts/run_license_checker.py +0 -0
  65. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/scripts/view_portal_object.py +0 -0
  66. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/secrets_utils.py +0 -0
  67. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/sheet_utils.py +0 -0
  68. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/snapshot_utils.py +0 -0
  69. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/ssl_certificate_utils.py +0 -0
  70. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/structured_data.py +0 -0
  71. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/submitr/progress_constants.py +0 -0
  72. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/submitr/ref_lookup_strategy.py +0 -0
  73. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/task_utils.py +0 -0
  74. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/tmpfile_utils.py +0 -0
  75. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/trace_utils.py +0 -0
  76. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/validation_utils.py +0 -0
  77. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/variant_utils.py +0 -0
  78. {dcicutils-8.8.3.1b21 → dcicutils-8.8.3.1b24}/dcicutils/zip_utils.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: dcicutils
3
- Version: 8.8.3.1b21
3
+ Version: 8.8.3.1b24
4
4
  Summary: Utility package for interacting with the 4DN Data Portal and other 4DN resources
5
5
  Home-page: https://github.com/4dn-dcic/utils
6
6
  License: MIT
@@ -279,10 +279,10 @@ class ProgressBar:
279
279
  # string in the display string where the progress bar should actually go,
280
280
  # which we do in _format_description. Other minor things too; see below.
281
281
  sys_stdout_write = sys.stdout.write
282
- last_text = None ; last_captured_output_text = None # noqa
282
+ last_text = None ; last_captured_output_text = None ; last_spin_change_time = None # noqa
283
283
  def tidy_stdout_write(text: str) -> None: # noqa
284
284
  nonlocal self, sys_stdout_write, sentinel_internal, spina, spini, spinn
285
- nonlocal last_text, last_captured_output_text
285
+ nonlocal last_text, last_captured_output_text, last_spin_change_time
286
286
  def replace_first(value: str, match: str, replacement: str) -> str: # noqa
287
287
  return value[:i] + replacement + value[i + len(match):] if (i := value.find(match)) >= 0 else value
288
288
  def remove_extra_trailing_spaces(text: str) -> str: # noqa
@@ -292,13 +292,17 @@ class ProgressBar:
292
292
  if (not text) or (last_text == text):
293
293
  return
294
294
  last_text = text
295
+ now = time.time()
295
296
  if (self._disabled or self._done) and sentinel_internal in text:
296
297
  # Another hack to really disable output on interrupt; in this case we set
297
298
  # tqdm.disable to True, but output can still dribble out, so if the output
298
299
  # looks like it is from tqdm and we are disabled/done then do no output.
299
300
  return
300
301
  if sentinel_internal in text:
301
- spinc = spina[spini % spinn] if not ("100%|" in text) else "✓" ; spini += 1 # noqa
302
+ spinc = spina[spini % spinn] if not ("100%|" in text) else "✓"
303
+ if last_spin_change_time is None or ((now - last_spin_change_time) >= 0.05):
304
+ spini += 1
305
+ last_spin_change_time = now
302
306
  text = replace_first(text, sentinel_internal, f" {spinc}")
303
307
  text = replace_first(text, "%|", "% ◀|")
304
308
  text = remove_extra_trailing_spaces(text) + f"{spinc} "
@@ -307,7 +311,7 @@ class ProgressBar:
307
311
  # the unit we gave, which is empty; idunno; just replace it here.
308
312
  text = replace_first(text, "s/ ", "/s ")
309
313
  if self._use_byte_size_for_rate and self._bar:
310
- rate = self._bar.n / (time.time() - self._started)
314
+ rate = self._bar.n / (now - self._started)
311
315
  text = text.replace("[rate]", f"{format_size(rate)}/s")
312
316
  sys_stdout_write(text)
313
317
  sys.stdout.flush()
@@ -342,9 +346,17 @@ class ProgressBar:
342
346
  if sys_stdout_write is not None:
343
347
  sys.stdout.write = sys_stdout_write
344
348
  def ascii_spinners() -> list: # noqa
345
- # Fun with ASCII spinners.
346
- spinner_chars = "⣾⣽⣻⢿⡿⣟⣯⣷" # borrowed from rich python package (other: ⠋⠙⠹⠸⠼⠴⠦⠧⠇⠏)
347
- return (list(spinner_chars[::-1]) * 7) + (list("|/-\\") * 2)
349
+ # Fun with ASCII spinner characters.
350
+ # Dots borrowed from "rich" python package (others: ⠋⠙⠹⠸⠼⠴⠦⠧⠇⠏).
351
+ # Others: "◴◷◶◵" "◰◳◲◱" "◡⊙◠" "⠁⠂⠄⡀⢀⠠⠐⠈" "▁▃▄▅▆▇█▇▆▅▄▃" "◢◣◤◥" "◐◓◑◒" "✶✸✹✺✹✷" "⠋⠙⠹⠸⠼⠴⠦⠧⠇⠏"
352
+ spinner_chars_a = "⣾⣽⣻⢿⡿⣟⣯⣷"
353
+ spinner_chars_b = "|/—\\"
354
+ spinner_chars_c = "◰◳◲◱"
355
+ spinner_chars_d = "◐◓◑◒"
356
+ spinner_chars_e = "◴◷◶◵"
357
+ return ((list(spinner_chars_a[::-1]) * 18) +
358
+ (list(spinner_chars_b) * 3) + (list(spinner_chars_c) * 3) +
359
+ (list(spinner_chars_d) * 3) + (list(spinner_chars_e) * 3))
348
360
  sys.stdout.write = tidy_stdout_write
349
361
  spina = ascii_spinners() ; spini = 0 ; spinn = len(spina) # noqa
350
362
  sentinel = "[progress]" ; sentinel_internal = f"{sentinel}:" # noqa
@@ -1,6 +1,6 @@
1
1
  [tool.poetry]
2
2
  name = "dcicutils"
3
- version = "8.8.3.1b21" # TODO: To become 8.8.4
3
+ version = "8.8.3.1b24" # TODO: To become 8.8.4
4
4
  description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources"
5
5
  authors = ["4DN-DCIC Team <support@4dnucleome.org>"]
6
6
  license = "MIT"