dcicutils 8.8.3.1b19__tar.gz → 8.8.3.1b21__tar.gz

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  1. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/PKG-INFO +1 -1
  2. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/datetime_utils.py +10 -7
  3. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/progress_bar.py +9 -7
  4. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/pyproject.toml +1 -1
  5. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/LICENSE.txt +0 -0
  6. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/README.rst +0 -0
  7. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/__init__.py +0 -0
  8. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/base.py +0 -0
  9. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/beanstalk_utils.py +0 -0
  10. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/bundle_utils.py +0 -0
  11. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/captured_output.py +0 -0
  12. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/cloudformation_utils.py +0 -0
  13. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/codebuild_utils.py +0 -0
  14. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/command_utils.py +0 -0
  15. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/common.py +0 -0
  16. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/contribution_scripts.py +0 -0
  17. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/contribution_utils.py +0 -0
  18. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/creds_utils.py +0 -0
  19. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/data_readers.py +0 -0
  20. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/data_utils.py +0 -0
  21. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/deployment_utils.py +0 -0
  22. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/diff_utils.py +0 -0
  23. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/docker_utils.py +0 -0
  24. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/ecr_scripts.py +0 -0
  25. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/ecr_utils.py +0 -0
  26. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/ecs_utils.py +0 -0
  27. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/env_base.py +0 -0
  28. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/env_manager.py +0 -0
  29. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/env_scripts.py +0 -0
  30. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/env_utils.py +0 -0
  31. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/env_utils_legacy.py +0 -0
  32. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/es_utils.py +0 -0
  33. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/exceptions.py +0 -0
  34. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/ff_mocks.py +0 -0
  35. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/ff_utils.py +0 -0
  36. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/file_utils.py +0 -0
  37. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/function_cache_decorator.py +0 -0
  38. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/glacier_utils.py +0 -0
  39. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/jh_utils.py +0 -0
  40. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/kibana/dashboards.json +0 -0
  41. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/kibana/readme.md +0 -0
  42. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/lang_utils.py +0 -0
  43. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/license_policies/c4-infrastructure.jsonc +0 -0
  44. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/license_policies/c4-python-infrastructure.jsonc +0 -0
  45. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/license_policies/park-lab-common-server.jsonc +0 -0
  46. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/license_policies/park-lab-common.jsonc +0 -0
  47. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc +0 -0
  48. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/license_policies/park-lab-pipeline.jsonc +0 -0
  49. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/license_utils.py +0 -0
  50. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/log_utils.py +0 -0
  51. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/misc_utils.py +0 -0
  52. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/obfuscation_utils.py +0 -0
  53. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/opensearch_utils.py +0 -0
  54. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/portal_object_utils.py +0 -0
  55. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/portal_utils.py +0 -0
  56. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/project_utils.py +0 -0
  57. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/qa_checkers.py +0 -0
  58. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/qa_utils.py +0 -0
  59. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/redis_tools.py +0 -0
  60. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/redis_utils.py +0 -0
  61. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/s3_utils.py +0 -0
  62. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/schema_utils.py +0 -0
  63. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/scripts/publish_to_pypi.py +0 -0
  64. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/scripts/run_license_checker.py +0 -0
  65. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/scripts/view_portal_object.py +0 -0
  66. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/secrets_utils.py +0 -0
  67. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/sheet_utils.py +0 -0
  68. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/snapshot_utils.py +0 -0
  69. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/ssl_certificate_utils.py +0 -0
  70. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/structured_data.py +0 -0
  71. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/submitr/progress_constants.py +0 -0
  72. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/submitr/ref_lookup_strategy.py +0 -0
  73. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/task_utils.py +0 -0
  74. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/tmpfile_utils.py +0 -0
  75. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/trace_utils.py +0 -0
  76. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/validation_utils.py +0 -0
  77. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/variant_utils.py +0 -0
  78. {dcicutils-8.8.3.1b19 → dcicutils-8.8.3.1b21}/dcicutils/zip_utils.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
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  Name: dcicutils
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- Version: 8.8.3.1b19
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+ Version: 8.8.3.1b21
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  Summary: Utility package for interacting with the 4DN Data Portal and other 4DN resources
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  Home-page: https://github.com/4dn-dcic/utils
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  License: MIT
@@ -235,8 +235,8 @@ def format_datetime(value: datetime,
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  return value.strftime(f"%Y-%m-%d")
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  else:
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  return value.strftime(f"%Y-%m-%dT%H:%M")
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- tz = value.strftime("%z")
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- tz = tz[:3] + ":" + tz[3:]
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+ if len(tz := value.strftime("%z")) > 3:
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+ tz = tz[:3] + ":" + tz[3:]
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  if nodate is True:
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  return value.strftime(f"%H:%M") + tz
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  elif notime is True:
@@ -244,7 +244,11 @@ def format_datetime(value: datetime,
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  else:
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  return value.strftime(f"%Y-%m-%dT%H:%M") + tz
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  if nodate is True:
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- return value.strftime(f"%H:%M:%S{f'.%f' if ms is True else ''}")
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+ if (not (notz is True)) and len(tz := value.strftime("%z")) > 3:
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+ tz = tz[:3] + ":" + tz[3:]
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+ else:
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+ tz = ""
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+ return value.strftime(f"%H:%M:%S{f'.%f' if ms is True else ''}") + tz
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  elif notime is True:
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  return value.strftime(f"%Y-%m-%d")
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  else:
@@ -278,21 +282,20 @@ def format_datetime(value: datetime,
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  def format_date(value: datetime,
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  utc: bool = False,
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- iso: bool = False,
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  tz: Optional[Union[timezone, bool]] = None,
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  verbose: bool = False,
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  noday: bool = False) -> str:
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- return format_datetime(value, utc=utc, iso=iso, tz=tz, verbose=verbose, noday=noday, notime=True)
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+ return format_datetime(value, utc=utc, tz=tz, verbose=verbose, noday=noday, notime=True)
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  def format_time(value: datetime,
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  utc: bool = False,
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  iso: bool = False,
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- ms: bool = False,
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  tz: Optional[Union[timezone, bool]] = None,
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+ ms: bool = False,
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  notz: bool = False,
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  noseconds: bool = False,
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  verbose: bool = False,
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  noday: bool = False) -> str:
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- return format_datetime(value, utc=utc, iso=iso, ms=ms, tz=tz, notz=notz,
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+ return format_datetime(value, utc=utc, tz=tz, iso=iso, ms=ms, notz=notz,
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  noseconds=noseconds, verbose=verbose, nodate=True)
@@ -161,6 +161,9 @@ class ProgressBar:
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  self.set_total(total, _norefresh=True)
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  self.set_progress(progress, _norefresh=True)
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  self.set_description(description)
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+ self.enable()
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+ self._done = False
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+ self._bar.reset()
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  self._started = time.time()
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  def done(self, description: Optional[str] = None) -> None:
@@ -311,12 +314,15 @@ class ProgressBar:
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  if self._captured_output_for_testing is not None:
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  # For testing only we replace vacilliting values in the out like rate,
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  # time elapsed, and ETA with static values; so that something like this:
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- # > Working / 20% ◀|█████████▌ | 1/5 | 536.00/s | 00:01 | ETA: 00:02
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+ # > Working 20% ◀|█████████▌ | 1/5 | 536.00/s | 00:01 | ETA: 00:02
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  # becomes something more static like this after calling this function:
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  # > Working | 20% ◀|### | 1/5 | 0.0/s | 00:00 | ETA: 00:00
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  # This function obviously has intimate knowledge of the output; better here than in tests.
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  def replace_time_dependent_values_with_static(text: str) -> str:
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  blocks = "\u2587|\u2588|\u2589|\u258a|\u258b|\u258c|\u258d|\u258e|\u258f"
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+ if text.endswith("| "):
324
+ # In case "|" is in the trailing spinner it messes up regex below.
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+ text = set_nth(text, len(text) - 2, "-")
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  if (n := find_nth_from_end(text, "|", 5)) >= 8:
321
327
  pattern = re.compile(
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  rf"(\s*)(\d*%? ◀\|)(?:\s*{blocks}|#)*\s*(\|\s*\d+/\d+)?(\s*\|\s*)"
@@ -337,12 +343,8 @@ class ProgressBar:
337
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  sys.stdout.write = sys_stdout_write
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  def ascii_spinners() -> list: # noqa
339
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  # Fun with ASCII spinners.
340
- return list("⣾⣽⣻⢿⡿⣟⣯⣷") # borrowed from rich python package
341
- # return list("⠋⠙⠹⠸⠼⠴⠦⠧⠇⠏") # borrowed from rich python package
342
- # return list("⠿⠻⠽⠾⠷⠯⠟")
343
- # return list("⠏⠛⠹⠼⠶⠧")
344
- # return list("⠻⠽⠾⠷⠯⠟")
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- # return list("|/—◦\\")
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+ spinner_chars = "⣾⣽⣻⢿⡿⣟⣯⣷" # borrowed from rich python package (other: ⠋⠙⠹⠸⠼⠴⠦⠧⠇⠏)
347
+ return (list(spinner_chars[::-1]) * 7) + (list("|/-\\") * 2)
346
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  sys.stdout.write = tidy_stdout_write
347
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  spina = ascii_spinners() ; spini = 0 ; spinn = len(spina) # noqa
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  sentinel = "[progress]" ; sentinel_internal = f"{sentinel}:" # noqa
@@ -1,6 +1,6 @@
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  [tool.poetry]
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  name = "dcicutils"
3
- version = "8.8.3.1b19" # TODO: To become 8.8.4
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+ version = "8.8.3.1b21" # TODO: To become 8.8.4
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  description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources"
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  authors = ["4DN-DCIC Team <support@4dnucleome.org>"]
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  license = "MIT"