dcicutils 8.8.1.1b5__tar.gz → 8.8.1.1b6__tar.gz
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- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/PKG-INFO +1 -1
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/structured_data.py +6 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/pyproject.toml +1 -1
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/LICENSE.txt +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/README.rst +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/__init__.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/base.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/beanstalk_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/bundle_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/captured_output.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/cloudformation_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/codebuild_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/command_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/common.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/contribution_scripts.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/contribution_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/creds_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/data_readers.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/data_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/datetime_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/deployment_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/diff_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/docker_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/ecr_scripts.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/ecr_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/ecs_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/env_base.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/env_manager.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/env_scripts.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/env_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/env_utils_legacy.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/es_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/exceptions.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/ff_mocks.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/ff_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/file_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/function_cache_decorator.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/glacier_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/jh_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/kibana/dashboards.json +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/kibana/readme.md +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/lang_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/license_policies/c4-infrastructure.jsonc +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/license_policies/c4-python-infrastructure.jsonc +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/license_policies/park-lab-common-server.jsonc +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/license_policies/park-lab-common.jsonc +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/license_policies/park-lab-pipeline.jsonc +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/license_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/log_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/misc_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/obfuscation_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/opensearch_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/portal_object_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/portal_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/project_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/qa_checkers.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/qa_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/redis_tools.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/redis_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/s3_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/schema_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/scripts/publish_to_pypi.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/scripts/run_license_checker.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/scripts/view_portal_object.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/secrets_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/sheet_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/snapshot_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/ssl_certificate_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/task_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/tmpfile_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/trace_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/validation_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/variant_utils.py +0 -0
- {dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/zip_utils.py +0 -0
@@ -91,6 +91,7 @@ class StructuredDataSet:
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self._errors = {}
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self._resolved_refs = set()
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self._validated = False
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+
self._nrows = 0
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self._autoadd_properties = autoadd if isinstance(autoadd, dict) and autoadd else None
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self._norefs = True if norefs is True else False
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self._debug_sleep = None
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@@ -194,6 +195,10 @@ class StructuredDataSet:
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upload_file["path"] = file_path
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return upload_files
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@property
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def nrows(self) -> int:
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return self._nrows
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def compare(self, progress: Optional[Callable] = None) -> dict:
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def get_counts() -> int:
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ntypes = 0
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@@ -328,6 +333,7 @@ class StructuredDataSet:
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noschema = False
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structured_row_template = None
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for row in reader:
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self._nrows += 1
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if self._debug_sleep:
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time.sleep(float(self._debug_sleep))
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if not structured_row_template: # Delay creation just so we don't reference schema if there are no rows.
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@@ -1,6 +1,6 @@
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[tool.poetry]
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name = "dcicutils"
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version = "8.8.1.
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version = "8.8.1.1b6" # TODO: To become 8.8.2
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description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources"
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authors = ["4DN-DCIC Team <support@4dnucleome.org>"]
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license = "MIT"
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{dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/license_policies/c4-infrastructure.jsonc
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{dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/license_policies/park-lab-common-server.jsonc
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{dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/license_policies/park-lab-common.jsonc
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{dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc
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{dcicutils-8.8.1.1b5 → dcicutils-8.8.1.1b6}/dcicutils/license_policies/park-lab-pipeline.jsonc
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