dcicutils 8.8.1.1b14__tar.gz → 8.8.1.1b15__tar.gz
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- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/PKG-INFO +1 -1
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/structured_data.py +3 -3
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/pyproject.toml +1 -1
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/LICENSE.txt +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/README.rst +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/__init__.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/base.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/beanstalk_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/bundle_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/captured_output.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/cloudformation_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/codebuild_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/command_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/common.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/contribution_scripts.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/contribution_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/creds_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/data_readers.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/data_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/datetime_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/deployment_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/diff_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/docker_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/ecr_scripts.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/ecr_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/ecs_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/env_base.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/env_manager.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/env_scripts.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/env_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/env_utils_legacy.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/es_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/exceptions.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/ff_mocks.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/ff_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/file_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/function_cache_decorator.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/glacier_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/jh_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/kibana/dashboards.json +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/kibana/readme.md +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/lang_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/license_policies/c4-infrastructure.jsonc +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/license_policies/c4-python-infrastructure.jsonc +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/license_policies/park-lab-common-server.jsonc +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/license_policies/park-lab-common.jsonc +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/license_policies/park-lab-pipeline.jsonc +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/license_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/log_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/misc_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/obfuscation_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/opensearch_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/portal_object_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/portal_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/progress_constants.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/project_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/qa_checkers.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/qa_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/redis_tools.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/redis_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/s3_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/schema_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/scripts/publish_to_pypi.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/scripts/run_license_checker.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/scripts/view_portal_object.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/secrets_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/sheet_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/snapshot_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/ssl_certificate_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/task_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/tmpfile_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/trace_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/validation_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/variant_utils.py +0 -0
- {dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/zip_utils.py +0 -0
@@ -192,7 +192,7 @@ class StructuredDataSet:
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diffs = {}
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if callable(progress):
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ntypes, nobjects = get_counts()
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progress({PROGRESS.ANALYZE_START.value:
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+
progress({PROGRESS.ANALYZE_START.value: PROGRESS.NOW(),
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PROGRESS.ANALYZE_COUNT_TYPES.value: ntypes, PROGRESS.ANALYZE_COUNT_ITEMS.value: nobjects})
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if self.data or self.portal: # TODO: what is this OR biz?
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refs = self.resolved_refs_with_uuids
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@@ -225,7 +225,7 @@ class StructuredDataSet:
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if callable(progress):
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progress({PROGRESS.ANALYZE_COUNT_LOOKUP.value: nlookups})
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if callable(progress):
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progress({PROGRESS.ANALYZE_DONE.value:
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progress({PROGRESS.ANALYZE_DONE.value: PROGRESS.NOW()})
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return diffs
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def load_file(self, file: str) -> None:
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@@ -272,7 +272,7 @@ class StructuredDataSet:
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return nrows, len(excel.sheet_names)
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if self._progress: # TODO: Move to _load_reader
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nrows, nsheets = get_counts()
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self._progress({PROGRESS.LOAD_START.value:
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self._progress({PROGRESS.LOAD_START.value: PROGRESS.NOW(),
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PROGRESS.LOAD_COUNT_SHEETS.value: nsheets, PROGRESS.LOAD_COUNT_ROWS.value: nrows})
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excel = Excel(file) # Order the sheet names by any specified ordering (e.g. ala snovault.loadxl).
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order = {Schema.type_name(key): index for index, key in enumerate(self._order)} if self._order else {}
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[tool.poetry]
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name = "dcicutils"
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version = "8.8.1.
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version = "8.8.1.1b15" # TODO: To become 8.8.2
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description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources"
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authors = ["4DN-DCIC Team <support@4dnucleome.org>"]
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license = "MIT"
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{dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/license_policies/c4-infrastructure.jsonc
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{dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/license_policies/park-lab-common.jsonc
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{dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc
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{dcicutils-8.8.1.1b14 → dcicutils-8.8.1.1b15}/dcicutils/license_policies/park-lab-pipeline.jsonc
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