dcicutils 8.8.0.1b16__tar.gz → 8.8.0.1b18__tar.gz
Sign up to get free protection for your applications and to get access to all the features.
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/PKG-INFO +1 -1
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/structured_data.py +9 -5
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/pyproject.toml +1 -1
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/LICENSE.txt +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/README.rst +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/__init__.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/base.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/beanstalk_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/bundle_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/captured_output.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/cloudformation_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/codebuild_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/command_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/common.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/contribution_scripts.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/contribution_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/creds_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/data_readers.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/data_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/datetime_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/deployment_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/diff_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/docker_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/ecr_scripts.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/ecr_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/ecs_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/env_base.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/env_manager.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/env_scripts.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/env_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/env_utils_legacy.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/es_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/exceptions.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/ff_mocks.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/ff_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/file_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/function_cache_decorator.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/glacier_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/jh_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/kibana/dashboards.json +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/kibana/readme.md +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/lang_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/license_policies/c4-infrastructure.jsonc +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/license_policies/c4-python-infrastructure.jsonc +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/license_policies/park-lab-common-server.jsonc +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/license_policies/park-lab-common.jsonc +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/license_policies/park-lab-pipeline.jsonc +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/license_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/log_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/misc_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/obfuscation_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/opensearch_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/portal_object_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/portal_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/project_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/qa_checkers.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/qa_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/redis_tools.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/redis_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/s3_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/schema_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/scripts/publish_to_pypi.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/scripts/run_license_checker.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/scripts/view_portal_object.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/secrets_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/sheet_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/snapshot_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/ssl_certificate_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/task_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/tmpfile_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/trace_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/validation_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/variant_utils.py +0 -0
- {dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/zip_utils.py +0 -0
@@ -92,14 +92,16 @@ class StructuredDataSet:
|
|
92
92
|
self._load_file(file) if file else None
|
93
93
|
|
94
94
|
def _progress_update(self, nrows: Union[int, Callable],
|
95
|
-
|
96
|
-
|
97
|
-
|
95
|
+
ref_resolved: Optional[int] = None,
|
96
|
+
ref_unresolved: Optional[int] = None,
|
97
|
+
ref_lookups: Optional[int] = None,
|
98
|
+
ref_cache_hits: Optional[int] = None,
|
99
|
+
ref_incorrect: Optional[int] = None) -> None:
|
98
100
|
if self._progress:
|
99
101
|
if callable(nrows):
|
100
102
|
nrows = nrows()
|
101
103
|
if isinstance(nrows, int) and nrows != 0:
|
102
|
-
self._progress(nrows,
|
104
|
+
self._progress(nrows, ref_resolved, ref_unresolved, ref_lookups, ref_cache_hits, ref_incorrect)
|
103
105
|
|
104
106
|
@property
|
105
107
|
def data(self) -> dict:
|
@@ -297,7 +299,9 @@ class StructuredDataSet:
|
|
297
299
|
self._add_properties(structured_row, self._autoadd_properties, schema)
|
298
300
|
self._add(type_name, structured_row)
|
299
301
|
if self._progress:
|
300
|
-
self._progress_update(-1, self.ref_total_count, self.ref_total_notfound_count,
|
302
|
+
self._progress_update(-1, self.ref_total_count, self.ref_total_notfound_count,
|
303
|
+
self.ref_lookup_count, self.ref_lookup_cache_hit_count,
|
304
|
+
self.ref_incorrect_identifying_property_count)
|
301
305
|
self._note_warning(reader.warnings, "reader")
|
302
306
|
if schema:
|
303
307
|
self._note_error(schema._unresolved_refs, "ref")
|
@@ -1,6 +1,6 @@
|
|
1
1
|
[tool.poetry]
|
2
2
|
name = "dcicutils"
|
3
|
-
version = "8.8.0.
|
3
|
+
version = "8.8.0.1b18" # TODO: To become 8.8.1
|
4
4
|
description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources"
|
5
5
|
authors = ["4DN-DCIC Team <support@4dnucleome.org>"]
|
6
6
|
license = "MIT"
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
{dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/license_policies/c4-infrastructure.jsonc
RENAMED
File without changes
|
File without changes
|
File without changes
|
{dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/license_policies/park-lab-common.jsonc
RENAMED
File without changes
|
{dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc
RENAMED
File without changes
|
{dcicutils-8.8.0.1b16 → dcicutils-8.8.0.1b18}/dcicutils/license_policies/park-lab-pipeline.jsonc
RENAMED
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|