dcicutils 8.7.0__tar.gz → 8.7.0.1b1__tar.gz
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- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/PKG-INFO +1 -1
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/portal_utils.py +6 -2
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/s3_utils.py +1 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/scripts/publish_to_pypi.py +3 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/pyproject.toml +1 -1
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/LICENSE.txt +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/README.rst +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/__init__.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/base.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/beanstalk_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/bundle_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/cloudformation_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/codebuild_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/command_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/common.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/contribution_scripts.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/contribution_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/creds_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/data_readers.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/data_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/deployment_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/diff_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/docker_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/ecr_scripts.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/ecr_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/ecs_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/env_base.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/env_manager.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/env_scripts.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/env_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/env_utils_legacy.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/es_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/exceptions.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/ff_mocks.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/ff_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/function_cache_decorator.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/glacier_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/jh_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/kibana/dashboards.json +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/kibana/readme.md +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/lang_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/license_policies/c4-infrastructure.jsonc +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/license_policies/c4-python-infrastructure.jsonc +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/license_policies/park-lab-common-server.jsonc +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/license_policies/park-lab-common.jsonc +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/license_policies/park-lab-pipeline.jsonc +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/license_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/log_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/misc_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/obfuscation_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/opensearch_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/project_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/qa_checkers.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/qa_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/redis_tools.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/redis_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/schema_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/scripts/run_license_checker.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/secrets_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/sheet_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/snapshot_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/ssl_certificate_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/structured_data.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/task_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/tmpfile_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/trace_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/validation_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/variant_utils.py +0 -0
- {dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/zip_utils.py +0 -0
@@ -258,6 +258,9 @@ class Portal:
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return to_camel_case(name if not name.endswith(".json") else name[:-5]) if isinstance(name, str) else ""
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def is_file_schema(self, schema_name: str) -> bool:
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"""
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Returns True iff the given schema name isa File type, i.e. has an ancestor which is of type File.
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"""
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if super_type_map := self.get_schemas_super_type_map():
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if file_super_type := super_type_map.get(Portal.FILE_SCHEMA_NAME):
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return self.schema_name(schema_name) in file_super_type
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@@ -266,8 +269,9 @@ class Portal:
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def get_schemas_super_type_map(self) -> dict:
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"""
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Returns the "super type map" for all of the known schemas (via /profiles).
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This is a dictionary
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This is a dictionary with property names which are all known schema type names which
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have (one or more) sub-types, and the value each such property name is an array of
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all of those sub-types (direct and all descendents), in breadth first order.
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"""
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def list_breadth_first(super_type_map: dict, super_type_name: str) -> dict:
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result = []
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@@ -49,6 +49,7 @@ class HealthPageKey: # This is moving here from cgap-portal.
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FILE_UPLOAD_BUCKET = 'file_upload_bucket' # = s3Utils.RAW_BUCKET_HEALTH_PAGE_KEY
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FOURSIGHT = 'foursight'
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FOURSIGHT_BUCKET_PREFIX = 'foursight_bucket_prefix'
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GIT = 'git'
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HIGLASS = 'higlass'
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IDENTITY = 'identity'
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INDEXER = 'indexer'
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@@ -243,6 +243,9 @@ def get_untracked_files() -> list:
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# Ignore any __pycache__ directories as they are already ignored by poetry publish.
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if os.path.isdir(untracked_file) and os.path.basename(untracked_file.rstrip("/")) == "__pycache__":
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continue
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# Ignore gitinfo.json which may exist if the repo wants to create this via GitHub Actions.
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if os.path.basename(untracked_file) == "gitinfo.json":
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continue
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untracked_files.append(untracked_file)
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return untracked_files
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@@ -1,6 +1,6 @@
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[tool.poetry]
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name = "dcicutils"
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version = "8.7.0"
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version = "8.7.0.1b1" # TODO: To become 8.7.1
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description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources"
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authors = ["4DN-DCIC Team <support@4dnucleome.org>"]
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license = "MIT"
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{dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/license_policies/c4-python-infrastructure.jsonc
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{dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/license_policies/park-lab-common-server.jsonc
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{dcicutils-8.7.0 → dcicutils-8.7.0.1b1}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc
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