dcicutils 8.7.0.1b3__tar.gz → 8.7.0.1b5__tar.gz
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- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/PKG-INFO +1 -1
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/portal_utils.py +50 -16
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/pyproject.toml +1 -1
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/LICENSE.txt +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/README.rst +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/__init__.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/base.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/beanstalk_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/bundle_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/cloudformation_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/codebuild_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/command_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/common.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/contribution_scripts.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/contribution_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/creds_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/data_readers.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/data_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/deployment_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/diff_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/docker_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/ecr_scripts.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/ecr_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/ecs_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/env_base.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/env_manager.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/env_scripts.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/env_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/env_utils_legacy.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/es_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/exceptions.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/ff_mocks.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/ff_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/function_cache_decorator.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/glacier_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/jh_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/kibana/dashboards.json +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/kibana/readme.md +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/lang_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/license_policies/c4-infrastructure.jsonc +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/license_policies/c4-python-infrastructure.jsonc +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/license_policies/park-lab-common-server.jsonc +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/license_policies/park-lab-common.jsonc +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/license_policies/park-lab-pipeline.jsonc +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/license_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/log_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/misc_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/obfuscation_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/opensearch_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/project_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/qa_checkers.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/qa_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/redis_tools.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/redis_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/s3_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/schema_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/scripts/publish_to_pypi.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/scripts/run_license_checker.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/secrets_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/sheet_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/snapshot_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/ssl_certificate_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/structured_data.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/task_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/tmpfile_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/trace_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/validation_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/variant_utils.py +0 -0
- {dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/zip_utils.py +0 -0
@@ -202,28 +202,45 @@ class Portal:
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def vapp(self) -> Optional[TestApp]:
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return self._vapp
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def get(self, url: str, follow: bool = True, **kwargs) -> OptionalResponse:
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+
def get(self, url: str, follow: bool = True, raise_for_status: bool = False, **kwargs) -> OptionalResponse:
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url = self.url(url)
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if not self._vapp:
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response
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response = requests.get(url, allow_redirects=follow, **self._kwargs(**kwargs))
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else:
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response = self._vapp.get(url, **self._kwargs(**kwargs))
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if response and response.status_code in [301, 302, 303, 307, 308] and follow:
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response = response.follow()
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response = self._response(response)
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if raise_for_status:
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response.raise_for_status()
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return response
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-
def patch(self, url: str, data: Optional[dict] = None, json: Optional[dict] = None,
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def patch(self, url: str, data: Optional[dict] = None, json: Optional[dict] = None,
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raise_for_status: bool = False, **kwargs) -> OptionalResponse:
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url = self.url(url)
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if not self._vapp:
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-
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response = requests.patch(url, data=data, json=json, **self._kwargs(**kwargs))
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else:
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response = self._vapp.patch_json(url, json or data, **self._kwargs(**kwargs))
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response = self._response(response)
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if raise_for_status:
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response.raise_for_status()
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return response
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def post(self, url: str, data: Optional[dict] = None, json: Optional[dict] = None,
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def post(self, url: str, data: Optional[dict] = None, json: Optional[dict] = None, files: Optional[dict] = None,
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raise_for_status: bool = False, **kwargs) -> OptionalResponse:
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url = self.url(url)
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if not self._vapp:
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if files:
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response = self._vapp.post(self.url(url), json or data, upload_files=files, **self._kwargs(**kwargs))
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response = requests.post(url, data=data, json=json, files=files, **self._kwargs(**kwargs))
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else:
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if files:
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response = self._vapp.post(url, json or data, upload_files=files, **self._kwargs(**kwargs))
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else:
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response = self._vapp.post_json(url, json or data, upload_files=files, **self._kwargs(**kwargs))
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response = self._response(response)
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if raise_for_status:
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response.raise_for_status()
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return response
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def get_metadata(self, object_id: str) -> Optional[dict]:
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return get_metadata(obj_id=object_id, vapp=self._vapp, key=self._key)
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@@ -257,11 +274,28 @@ class Portal:
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def schema_name(name: str) -> str:
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return to_camel_case(name if not name.endswith(".json") else name[:-5]) if isinstance(name, str) else ""
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def is_schema_type(self, value: dict, schema_type: str) -> bool:
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"""
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Returns True iff the given object isa type of the given schema type.
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"""
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if isinstance(value, dict) and (value_types := value.get("@type")):
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if isinstance(value_types, str):
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return self.is_specified_schema(value_types, schema_type)
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elif isinstance(value_types, list):
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for value_type in value_types:
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if self.is_specified_schema(value_type, schema_type):
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return True
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return False
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def is_specified_schema(self, schema_name: str, schema_type: str) -> bool:
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"""
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Returns True iff the given schema name isa type of the given schema type name,
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i.e. has an ancestor which is of type that given type.
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"""
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schema_name = self.schema_name(schema_name)
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schema_type = self.schema_name(schema_type)
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if schema_name == schema_type:
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return True
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if super_type_map := self.get_schemas_super_type_map():
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if super_type := super_type_map.get(schema_type):
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return self.schema_name(schema_name) in super_type
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@@ -1,6 +1,6 @@
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[tool.poetry]
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name = "dcicutils"
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version = "8.7.0.
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version = "8.7.0.1b5" # TODO: To become 8.7.1
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description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources"
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authors = ["4DN-DCIC Team <support@4dnucleome.org>"]
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license = "MIT"
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{dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/license_policies/c4-infrastructure.jsonc
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{dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/license_policies/park-lab-common-server.jsonc
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{dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/license_policies/park-lab-common.jsonc
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{dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc
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{dcicutils-8.7.0.1b3 → dcicutils-8.7.0.1b5}/dcicutils/license_policies/park-lab-pipeline.jsonc
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