dcicutils 8.18.0__tar.gz → 8.18.1.1b1__tar.gz

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Files changed (83) hide show
  1. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/PKG-INFO +1 -1
  2. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/portal_utils.py +13 -0
  3. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/submitr/custom_excel.py +1 -1
  4. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/pyproject.toml +1 -1
  5. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/LICENSE.txt +0 -0
  6. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/README.rst +0 -0
  7. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/__init__.py +0 -0
  8. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/base.py +0 -0
  9. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/beanstalk_utils.py +0 -0
  10. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/bundle_utils.py +0 -0
  11. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/captured_output.py +0 -0
  12. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/cloudformation_utils.py +0 -0
  13. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/codebuild_utils.py +0 -0
  14. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/command_utils.py +0 -0
  15. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/common.py +0 -0
  16. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/contribution_scripts.py +0 -0
  17. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/contribution_utils.py +0 -0
  18. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/creds_utils.py +0 -0
  19. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/data_readers.py +0 -0
  20. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/data_utils.py +0 -0
  21. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/datetime_utils.py +0 -0
  22. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/deployment_utils.py +0 -0
  23. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/diff_utils.py +0 -0
  24. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/docker_utils.py +0 -0
  25. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/ecr_scripts.py +0 -0
  26. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/ecr_utils.py +0 -0
  27. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/ecs_utils.py +0 -0
  28. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/env_base.py +0 -0
  29. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/env_manager.py +0 -0
  30. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/env_scripts.py +0 -0
  31. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/env_utils.py +0 -0
  32. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/env_utils_legacy.py +0 -0
  33. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/es_utils.py +0 -0
  34. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/exceptions.py +0 -0
  35. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/ff_mocks.py +0 -0
  36. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/ff_utils.py +0 -0
  37. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/file_utils.py +0 -0
  38. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/function_cache_decorator.py +0 -0
  39. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/glacier_utils.py +0 -0
  40. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/hack_for_elasticsearch_numpy_usage.py +0 -0
  41. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/http_utils.py +0 -0
  42. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/jh_utils.py +0 -0
  43. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/kibana/dashboards.json +0 -0
  44. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/kibana/readme.md +0 -0
  45. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/lang_utils.py +0 -0
  46. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/license_policies/c4-infrastructure.jsonc +0 -0
  47. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/license_policies/c4-python-infrastructure.jsonc +0 -0
  48. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/license_policies/park-lab-common-server.jsonc +0 -0
  49. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/license_policies/park-lab-common.jsonc +0 -0
  50. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc +0 -0
  51. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/license_policies/park-lab-pipeline.jsonc +0 -0
  52. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/license_utils.py +0 -0
  53. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/log_utils.py +0 -0
  54. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/misc_utils.py +0 -0
  55. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/obfuscation_utils.py +0 -0
  56. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/opensearch_utils.py +0 -0
  57. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/portal_object_utils.py +0 -0
  58. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/progress_bar.py +0 -0
  59. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/project_utils.py +0 -0
  60. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/qa_checkers.py +0 -0
  61. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/qa_utils.py +0 -0
  62. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/redis_tools.py +0 -0
  63. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/redis_utils.py +0 -0
  64. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/s3_utils.py +0 -0
  65. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/schema_utils.py +0 -0
  66. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/scripts/publish_to_pypi.py +0 -0
  67. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/scripts/run_license_checker.py +0 -0
  68. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/scripts/update_portal_object.py +0 -0
  69. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/scripts/view_portal_object.py +0 -0
  70. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/secrets_utils.py +0 -0
  71. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/sheet_utils.py +0 -0
  72. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/snapshot_utils.py +0 -0
  73. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/ssl_certificate_utils.py +0 -0
  74. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/structured_data.py +0 -0
  75. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/submitr/config/custom_column_mappings.json +0 -0
  76. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/submitr/progress_constants.py +0 -0
  77. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/submitr/ref_lookup_strategy.py +0 -0
  78. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/task_utils.py +0 -0
  79. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/tmpfile_utils.py +0 -0
  80. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/trace_utils.py +0 -0
  81. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/validation_utils.py +0 -0
  82. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/variant_utils.py +0 -0
  83. {dcicutils-8.18.0 → dcicutils-8.18.1.1b1}/dcicutils/zip_utils.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: dcicutils
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- Version: 8.18.0
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+ Version: 8.18.1.1b1
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  Summary: Utility package for interacting with the 4DN Data Portal and other 4DN resources
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  Home-page: https://github.com/4dn-dcic/utils
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  License: MIT
@@ -471,6 +471,19 @@ class Portal:
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  super_type_map_flattened[super_type_name] = list_breadth_first(super_type_map, super_type_name)
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  return super_type_map_flattened
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+ @lru_cache(maxsize=100)
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+ def get_schema_super_type_names(self, schema_name: str, include_schema_name: bool = False) -> List[str]:
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+ if isinstance(schema_name, str) and (schema_name := self.schema_name(schema_name)):
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+ if isinstance(super_type_map := self.get_schemas_super_type_map(), dict):
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+ super_types = set()
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+ for super_type_name in super_type_map:
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+ if schema_name in super_type_map[super_type_name]:
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+ super_types.add(super_type_name)
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+ if (include_schema_name is True) and super_types and self.get_schema(schema_name):
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+ super_types.add(schema_name)
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+ return list(super_types)
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+ return []
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+
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  @lru_cache(maxsize=100)
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  def get_schema_subtype_names(self, type_name: str) -> List[str]:
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  if not (schemas_super_type_map := self.get_schemas_super_type_map()):
@@ -76,7 +76,7 @@ from dcicutils.misc_utils import to_boolean, to_float, to_integer
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  # the same (portal) type; see comments below near the ExcelSheetName class definition.
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  CUSTOM_COLUMN_MAPPINGS_BASE_URL = "https://raw.githubusercontent.com/smaht-dac/submitr/refs/heads"
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- CUSTOM_COLUMN_MAPPINGS_BRANCH = "dmichaels-custom-column-mappings-20250115"
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+ CUSTOM_COLUMN_MAPPINGS_BRANCH = "master"
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  CUSTOM_COLUMN_MAPPINGS_PATH = "submitr/config/custom_column_mappings.json"
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  CUSTOM_COLUMN_MAPPINGS_URL = f"{CUSTOM_COLUMN_MAPPINGS_BASE_URL}/{CUSTOM_COLUMN_MAPPINGS_BRANCH}/{CUSTOM_COLUMN_MAPPINGS_PATH}" # noqa
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  CUSTOM_COLUMN_MAPPINGS_LOCAL = False
@@ -1,6 +1,6 @@
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  [tool.poetry]
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  name = "dcicutils"
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- version = "8.18.0"
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+ version = "8.18.1.1b1" # TODO: 8.18.2
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  description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources"
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  authors = ["4DN-DCIC Team <support@4dnucleome.org>"]
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  license = "MIT"
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