dcicutils 8.17.0__tar.gz → 8.17.0.1b1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (81) hide show
  1. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/PKG-INFO +1 -1
  2. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/structured_data.py +3 -3
  3. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/pyproject.toml +1 -1
  4. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/LICENSE.txt +0 -0
  5. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/README.rst +0 -0
  6. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/__init__.py +0 -0
  7. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/base.py +0 -0
  8. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/beanstalk_utils.py +0 -0
  9. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/bundle_utils.py +0 -0
  10. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/captured_output.py +0 -0
  11. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/cloudformation_utils.py +0 -0
  12. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/codebuild_utils.py +0 -0
  13. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/command_utils.py +0 -0
  14. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/common.py +0 -0
  15. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/contribution_scripts.py +0 -0
  16. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/contribution_utils.py +0 -0
  17. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/creds_utils.py +0 -0
  18. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/data_readers.py +0 -0
  19. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/data_utils.py +0 -0
  20. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/datetime_utils.py +0 -0
  21. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/deployment_utils.py +0 -0
  22. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/diff_utils.py +0 -0
  23. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/docker_utils.py +0 -0
  24. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/ecr_scripts.py +0 -0
  25. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/ecr_utils.py +0 -0
  26. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/ecs_utils.py +0 -0
  27. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/env_base.py +0 -0
  28. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/env_manager.py +0 -0
  29. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/env_scripts.py +0 -0
  30. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/env_utils.py +0 -0
  31. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/env_utils_legacy.py +0 -0
  32. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/es_utils.py +0 -0
  33. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/exceptions.py +0 -0
  34. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/ff_mocks.py +0 -0
  35. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/ff_utils.py +0 -0
  36. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/file_utils.py +0 -0
  37. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/function_cache_decorator.py +0 -0
  38. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/glacier_utils.py +0 -0
  39. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/hack_for_elasticsearch_numpy_usage.py +0 -0
  40. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/http_utils.py +0 -0
  41. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/jh_utils.py +0 -0
  42. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/kibana/dashboards.json +0 -0
  43. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/kibana/readme.md +0 -0
  44. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/lang_utils.py +0 -0
  45. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/license_policies/c4-infrastructure.jsonc +0 -0
  46. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/license_policies/c4-python-infrastructure.jsonc +0 -0
  47. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/license_policies/park-lab-common-server.jsonc +0 -0
  48. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/license_policies/park-lab-common.jsonc +0 -0
  49. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc +0 -0
  50. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/license_policies/park-lab-pipeline.jsonc +0 -0
  51. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/license_utils.py +0 -0
  52. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/log_utils.py +0 -0
  53. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/misc_utils.py +0 -0
  54. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/obfuscation_utils.py +0 -0
  55. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/opensearch_utils.py +0 -0
  56. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/portal_object_utils.py +0 -0
  57. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/portal_utils.py +0 -0
  58. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/progress_bar.py +0 -0
  59. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/project_utils.py +0 -0
  60. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/qa_checkers.py +0 -0
  61. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/qa_utils.py +0 -0
  62. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/redis_tools.py +0 -0
  63. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/redis_utils.py +0 -0
  64. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/s3_utils.py +0 -0
  65. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/schema_utils.py +0 -0
  66. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/scripts/publish_to_pypi.py +0 -0
  67. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/scripts/run_license_checker.py +0 -0
  68. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/scripts/update_portal_object.py +0 -0
  69. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/scripts/view_portal_object.py +0 -0
  70. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/secrets_utils.py +0 -0
  71. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/sheet_utils.py +0 -0
  72. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/snapshot_utils.py +0 -0
  73. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/ssl_certificate_utils.py +0 -0
  74. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/submitr/progress_constants.py +0 -0
  75. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/submitr/ref_lookup_strategy.py +0 -0
  76. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/task_utils.py +0 -0
  77. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/tmpfile_utils.py +0 -0
  78. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/trace_utils.py +0 -0
  79. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/validation_utils.py +0 -0
  80. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/variant_utils.py +0 -0
  81. {dcicutils-8.17.0 → dcicutils-8.17.0.1b1}/dcicutils/zip_utils.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: dcicutils
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- Version: 8.17.0
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+ Version: 8.17.0.1b1
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  Summary: Utility package for interacting with the 4DN Data Portal and other 4DN resources
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  Home-page: https://github.com/4dn-dcic/utils
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  License: MIT
@@ -242,7 +242,7 @@ class StructuredDataSet:
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  for portal_object in self.data[type_name]:
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  portal_object = PortalObject(portal_object, portal=self.portal, type=type_name)
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  existing_object, identifying_path, nlookups = (
245
- portal_object.lookup(raw=True, ref_lookup_strategy=self._ref_lookup_strategy))
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+ portal_object.lookup(raw=False, ref_lookup_strategy=self._ref_lookup_strategy))
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  if existing_object:
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  object_diffs, nlookups_compare = portal_object.compare(
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  existing_object, consider_refs=True, resolved_refs=refs)
@@ -459,7 +459,7 @@ class StructuredDataSet:
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  just returns the given object. Note that the given object may be CHANGED in place.
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  """
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  for identifying_path in self._portal.get_identifying_paths(portal_object, portal_type):
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- if existing_portal_object := self._portal.get_metadata(identifying_path, raw=True, raise_exception=False):
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+ if existing_portal_object := self._portal.get_metadata(identifying_path, raw=False, raise_exception=False):
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  return merge_objects(existing_portal_object, portal_object, primitive_lists=True)
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  return portal_object
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@@ -981,7 +981,7 @@ class Portal(PortalBase):
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981
 
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  def ref_lookup_uncached(self, object_name: str) -> Optional[dict]:
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  try:
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- result = super().get_metadata(object_name, raw=True)
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+ result = super().get_metadata(object_name, raw=False)
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  self._ref_lookup_found_count += 1
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  return result
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  except Exception as e:
@@ -1,6 +1,6 @@
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  [tool.poetry]
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  name = "dcicutils"
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- version = "8.17.0"
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+ version = "8.17.0.1b1" # TODO: 8.18.0
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  description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources"
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  authors = ["4DN-DCIC Team <support@4dnucleome.org>"]
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  license = "MIT"
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File without changes