dcicutils 8.17.0.1b3__tar.gz → 8.17.0.1b4__tar.gz

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Files changed (83) hide show
  1. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/PKG-INFO +1 -1
  2. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/submitr/custom_excel.py +5 -1
  3. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/pyproject.toml +1 -1
  4. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/LICENSE.txt +0 -0
  5. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/README.rst +0 -0
  6. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/__init__.py +0 -0
  7. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/base.py +0 -0
  8. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/beanstalk_utils.py +0 -0
  9. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/bundle_utils.py +0 -0
  10. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/captured_output.py +0 -0
  11. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/cloudformation_utils.py +0 -0
  12. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/codebuild_utils.py +0 -0
  13. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/command_utils.py +0 -0
  14. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/common.py +0 -0
  15. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/contribution_scripts.py +0 -0
  16. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/contribution_utils.py +0 -0
  17. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/creds_utils.py +0 -0
  18. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/data_readers.py +0 -0
  19. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/data_utils.py +0 -0
  20. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/datetime_utils.py +0 -0
  21. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/deployment_utils.py +0 -0
  22. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/diff_utils.py +0 -0
  23. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/docker_utils.py +0 -0
  24. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/ecr_scripts.py +0 -0
  25. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/ecr_utils.py +0 -0
  26. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/ecs_utils.py +0 -0
  27. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/env_base.py +0 -0
  28. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/env_manager.py +0 -0
  29. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/env_scripts.py +0 -0
  30. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/env_utils.py +0 -0
  31. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/env_utils_legacy.py +0 -0
  32. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/es_utils.py +0 -0
  33. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/exceptions.py +0 -0
  34. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/ff_mocks.py +0 -0
  35. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/ff_utils.py +0 -0
  36. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/file_utils.py +0 -0
  37. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/function_cache_decorator.py +0 -0
  38. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/glacier_utils.py +0 -0
  39. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/hack_for_elasticsearch_numpy_usage.py +0 -0
  40. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/http_utils.py +0 -0
  41. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/jh_utils.py +0 -0
  42. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/kibana/dashboards.json +0 -0
  43. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/kibana/readme.md +0 -0
  44. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/lang_utils.py +0 -0
  45. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/license_policies/c4-infrastructure.jsonc +0 -0
  46. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/license_policies/c4-python-infrastructure.jsonc +0 -0
  47. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/license_policies/park-lab-common-server.jsonc +0 -0
  48. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/license_policies/park-lab-common.jsonc +0 -0
  49. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc +0 -0
  50. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/license_policies/park-lab-pipeline.jsonc +0 -0
  51. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/license_utils.py +0 -0
  52. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/log_utils.py +0 -0
  53. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/misc_utils.py +0 -0
  54. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/obfuscation_utils.py +0 -0
  55. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/opensearch_utils.py +0 -0
  56. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/portal_object_utils.py +0 -0
  57. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/portal_utils.py +0 -0
  58. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/progress_bar.py +0 -0
  59. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/project_utils.py +0 -0
  60. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/qa_checkers.py +0 -0
  61. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/qa_utils.py +0 -0
  62. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/redis_tools.py +0 -0
  63. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/redis_utils.py +0 -0
  64. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/s3_utils.py +0 -0
  65. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/schema_utils.py +0 -0
  66. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/scripts/publish_to_pypi.py +0 -0
  67. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/scripts/run_license_checker.py +0 -0
  68. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/scripts/update_portal_object.py +0 -0
  69. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/scripts/view_portal_object.py +0 -0
  70. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/secrets_utils.py +0 -0
  71. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/sheet_utils.py +0 -0
  72. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/snapshot_utils.py +0 -0
  73. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/ssl_certificate_utils.py +0 -0
  74. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/structured_data.py +0 -0
  75. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/submitr/config/custom_column_mappings.json +0 -0
  76. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/submitr/progress_constants.py +0 -0
  77. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/submitr/ref_lookup_strategy.py +0 -0
  78. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/task_utils.py +0 -0
  79. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/tmpfile_utils.py +0 -0
  80. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/trace_utils.py +0 -0
  81. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/validation_utils.py +0 -0
  82. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/variant_utils.py +0 -0
  83. {dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/zip_utils.py +0 -0
{dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: dcicutils
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- Version: 8.17.0.1b3
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+ Version: 8.17.0.1b4
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  Summary: Utility package for interacting with the 4DN Data Portal and other 4DN resources
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  Home-page: https://github.com/4dn-dcic/utils
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  License: MIT
{dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/dcicutils/submitr/custom_excel.py RENAMED
@@ -87,9 +87,13 @@ COLUMN_NAME_SEPARATOR = "."
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  class CustomExcel(Excel):
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+ def __init__(self, *args, **kwargs):
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+ super().__init__(*args, **kwargs)
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+ self._custom_column_mappings = CustomExcel._get_custom_column_mappings()
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+
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  def sheet_reader(self, sheet_name: str) -> ExcelSheetReader:
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  return CustomExcelSheetReader(self, sheet_name=sheet_name, workbook=self._workbook,
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- custom_column_mappings=CustomExcel._get_custom_column_mappings())
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+ custom_column_mappings=self._custom_column_mappings)
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  def effective_sheet_name(self, sheet_name: str) -> str:
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  if (underscore := sheet_name.find("_")) > 1:
{dcicutils-8.17.0.1b3 → dcicutils-8.17.0.1b4}/pyproject.toml RENAMED
@@ -1,6 +1,6 @@
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  [tool.poetry]
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  name = "dcicutils"
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- version = "8.17.0.1b3" # TODO: 8.18.0
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+ version = "8.17.0.1b4" # TODO: 8.18.0
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  description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources"
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  authors = ["4DN-DCIC Team <support@4dnucleome.org>"]
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  license = "MIT"