dcicutils 8.16.6__tar.gz → 8.16.6.1b1__tar.gz

Sign up to get free protection for your applications and to get access to all the features.
Files changed (81) hide show
  1. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/PKG-INFO +1 -1
  2. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/structured_data.py +5 -0
  3. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/pyproject.toml +1 -1
  4. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/LICENSE.txt +0 -0
  5. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/README.rst +0 -0
  6. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/__init__.py +0 -0
  7. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/base.py +0 -0
  8. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/beanstalk_utils.py +0 -0
  9. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/bundle_utils.py +0 -0
  10. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/captured_output.py +0 -0
  11. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/cloudformation_utils.py +0 -0
  12. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/codebuild_utils.py +0 -0
  13. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/command_utils.py +0 -0
  14. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/common.py +0 -0
  15. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/contribution_scripts.py +0 -0
  16. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/contribution_utils.py +0 -0
  17. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/creds_utils.py +0 -0
  18. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/data_readers.py +0 -0
  19. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/data_utils.py +0 -0
  20. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/datetime_utils.py +0 -0
  21. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/deployment_utils.py +0 -0
  22. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/diff_utils.py +0 -0
  23. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/docker_utils.py +0 -0
  24. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/ecr_scripts.py +0 -0
  25. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/ecr_utils.py +0 -0
  26. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/ecs_utils.py +0 -0
  27. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/env_base.py +0 -0
  28. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/env_manager.py +0 -0
  29. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/env_scripts.py +0 -0
  30. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/env_utils.py +0 -0
  31. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/env_utils_legacy.py +0 -0
  32. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/es_utils.py +0 -0
  33. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/exceptions.py +0 -0
  34. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/ff_mocks.py +0 -0
  35. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/ff_utils.py +0 -0
  36. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/file_utils.py +0 -0
  37. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/function_cache_decorator.py +0 -0
  38. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/glacier_utils.py +0 -0
  39. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/hack_for_elasticsearch_numpy_usage.py +0 -0
  40. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/http_utils.py +0 -0
  41. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/jh_utils.py +0 -0
  42. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/kibana/dashboards.json +0 -0
  43. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/kibana/readme.md +0 -0
  44. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/lang_utils.py +0 -0
  45. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/license_policies/c4-infrastructure.jsonc +0 -0
  46. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/license_policies/c4-python-infrastructure.jsonc +0 -0
  47. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/license_policies/park-lab-common-server.jsonc +0 -0
  48. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/license_policies/park-lab-common.jsonc +0 -0
  49. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc +0 -0
  50. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/license_policies/park-lab-pipeline.jsonc +0 -0
  51. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/license_utils.py +0 -0
  52. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/log_utils.py +0 -0
  53. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/misc_utils.py +0 -0
  54. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/obfuscation_utils.py +0 -0
  55. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/opensearch_utils.py +0 -0
  56. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/portal_object_utils.py +0 -0
  57. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/portal_utils.py +0 -0
  58. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/progress_bar.py +0 -0
  59. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/project_utils.py +0 -0
  60. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/qa_checkers.py +0 -0
  61. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/qa_utils.py +0 -0
  62. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/redis_tools.py +0 -0
  63. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/redis_utils.py +0 -0
  64. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/s3_utils.py +0 -0
  65. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/schema_utils.py +0 -0
  66. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/scripts/publish_to_pypi.py +0 -0
  67. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/scripts/run_license_checker.py +0 -0
  68. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/scripts/update_portal_object.py +0 -0
  69. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/scripts/view_portal_object.py +0 -0
  70. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/secrets_utils.py +0 -0
  71. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/sheet_utils.py +0 -0
  72. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/snapshot_utils.py +0 -0
  73. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/ssl_certificate_utils.py +0 -0
  74. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/submitr/progress_constants.py +0 -0
  75. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/submitr/ref_lookup_strategy.py +0 -0
  76. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/task_utils.py +0 -0
  77. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/tmpfile_utils.py +0 -0
  78. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/trace_utils.py +0 -0
  79. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/validation_utils.py +0 -0
  80. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/variant_utils.py +0 -0
  81. {dcicutils-8.16.6 → dcicutils-8.16.6.1b1}/dcicutils/zip_utils.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: dcicutils
3
- Version: 8.16.6
3
+ Version: 8.16.6.1b1
4
4
  Summary: Utility package for interacting with the 4DN Data Portal and other 4DN resources
5
5
  Home-page: https://github.com/4dn-dcic/utils
6
6
  License: MIT
@@ -59,6 +59,7 @@ class StructuredDataSet:
59
59
  progress: Optional[Callable] = None,
60
60
  validator_hook: Optional[Callable] = None,
61
61
  validator_sheet_hook: Optional[Callable] = None,
62
+ row_reader_mapper: Optional[Callable] = None,
62
63
  debug_sleep: Optional[str] = None) -> None:
63
64
  self._progress = progress if callable(progress) else None
64
65
  self._data = {}
@@ -79,6 +80,7 @@ class StructuredDataSet:
79
80
  self._merge = True if merge is True else False # New merge functionality (2024-05-25)
80
81
  self._validator_hook = validator_hook if callable(validator_hook) else None
81
82
  self._validator_sheet_hook = validator_sheet_hook if callable(validator_sheet_hook) else None
83
+ self._row_reader_mapper = row_reader_mapper if callable(row_reader_mapper) else None
82
84
  self._debug_sleep = None
83
85
  if debug_sleep:
84
86
  try:
@@ -374,7 +376,10 @@ class StructuredDataSet:
374
376
  schema = None
375
377
  noschema = False
376
378
  structured_row_template = None
379
+ sheet_name = reader.sheet_name if self._row_reader_mapper and hasattr(reader, "sheet_name") else None
377
380
  for row in reader:
381
+ if self._row_reader_mapper and (not isinstance(row := self._row_reader_mapper(row, sheet_name), dict)):
382
+ continue
378
383
  self._nrows += 1
379
384
  if self._debug_sleep:
380
385
  time.sleep(float(self._debug_sleep))
@@ -1,6 +1,6 @@
1
1
  [tool.poetry]
2
2
  name = "dcicutils"
3
- version = "8.16.6"
3
+ version = "8.16.6.1b1" # TODO: 8.17.0
4
4
  description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources"
5
5
  authors = ["4DN-DCIC Team <support@4dnucleome.org>"]
6
6
  license = "MIT"
File without changes
File without changes