dcicutils 8.16.2__tar.gz → 8.16.2.1b1__tar.gz
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- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/PKG-INFO +1 -1
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/portal_utils.py +36 -3
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/pyproject.toml +1 -1
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/LICENSE.txt +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/README.rst +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/__init__.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/base.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/beanstalk_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/bundle_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/captured_output.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/cloudformation_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/codebuild_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/command_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/common.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/contribution_scripts.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/contribution_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/creds_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/data_readers.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/data_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/datetime_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/deployment_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/diff_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/docker_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/ecr_scripts.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/ecr_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/ecs_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/env_base.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/env_manager.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/env_scripts.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/env_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/env_utils_legacy.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/es_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/exceptions.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/ff_mocks.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/ff_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/file_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/function_cache_decorator.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/glacier_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/hack_for_elasticsearch_numpy_usage.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/http_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/jh_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/kibana/dashboards.json +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/kibana/readme.md +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/lang_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/license_policies/c4-infrastructure.jsonc +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/license_policies/c4-python-infrastructure.jsonc +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/license_policies/park-lab-common-server.jsonc +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/license_policies/park-lab-common.jsonc +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/license_policies/park-lab-pipeline.jsonc +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/license_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/log_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/misc_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/obfuscation_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/opensearch_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/portal_object_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/progress_bar.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/project_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/qa_checkers.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/qa_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/redis_tools.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/redis_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/s3_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/schema_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/scripts/publish_to_pypi.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/scripts/run_license_checker.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/scripts/update_portal_object.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/scripts/view_portal_object.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/secrets_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/sheet_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/snapshot_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/ssl_certificate_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/structured_data.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/submitr/progress_constants.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/submitr/ref_lookup_strategy.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/task_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/tmpfile_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/trace_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/validation_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/variant_utils.py +0 -0
- {dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/zip_utils.py +0 -0
@@ -209,8 +209,25 @@ class Portal:
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return self._vapp
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def get(self, url: str, follow: bool = True,
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raw: bool = False, database: bool = False,
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+
raw: bool = False, database: bool = False,
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limit: Optional[int] = None, offset: Optional[int] = None, field: Optional[str] = None,
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raise_for_status: bool = False, **kwargs) -> OptionalResponse:
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url = self.url(url, raw, database)
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if isinstance(limit, int) and (limit >= 0):
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if "?" in url:
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url += f"&limit={limit}"
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else:
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url += f"?limit={limit}"
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if isinstance(offset, int) and (offset >= 0):
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if "?" in url:
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url += "&from={offset}"
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else:
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url += "?from={offset}"
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if isinstance(field, str) and field:
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if "?" in url:
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url += "&field={field}"
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else:
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url += "?field={field}"
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if not self.vapp:
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response = requests.get(url, allow_redirects=follow, **self._kwargs(**kwargs))
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else:
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@@ -252,14 +269,30 @@ class Portal:
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response.raise_for_status()
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return response
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-
def get_metadata(self, object_id: str, raw: bool = False,
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def get_metadata(self, object_id: str, raw: bool = False, database: bool = False,
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limit: Optional[int] = None, offset: Optional[int] = None, field: Optional[str] = None,
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raise_exception: bool = True) -> Optional[dict]:
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if isinstance(raw, bool) and raw:
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add_on = "frame=raw" + ("&datastore=database" if isinstance(database, bool) and database else "")
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elif database:
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add_on = "datastore=database"
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else:
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add_on = ""
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if isinstance(limit, int) and (limit >= 0):
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if add_on:
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add_on += f"&limit={limit}"
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else:
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add_on += f"limit={limit}"
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if isinstance(offset, int) and (offset >= 0):
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if add_on:
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add_on += "&from={offset}"
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else:
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add_on += "from={offset}"
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if isinstance(field, int) and field:
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if add_on:
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add_on += "&field={field}"
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else:
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add_on += "field={field}"
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if raise_exception:
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return get_metadata(obj_id=object_id, vapp=self.vapp, key=self.key, add_on=add_on)
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else:
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@@ -1,6 +1,6 @@
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[tool.poetry]
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name = "dcicutils"
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version = "8.16.2"
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version = "8.16.2.1b1" # TOOD: To become 8.16.3
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description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources"
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authors = ["4DN-DCIC Team <support@4dnucleome.org>"]
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license = "MIT"
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{dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/license_policies/c4-infrastructure.jsonc
RENAMED
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{dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/license_policies/c4-python-infrastructure.jsonc
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{dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/license_policies/park-lab-common-server.jsonc
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{dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/license_policies/park-lab-gpl-pipeline.jsonc
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{dcicutils-8.16.2 → dcicutils-8.16.2.1b1}/dcicutils/license_policies/park-lab-pipeline.jsonc
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